Non-Coding RNA Search

Ss1.1-rpigcb_4130.5

Sequence:


               
               CGGAGGCTGCCGTGGTCGGAAACGCAGGCCCCCCTGGTGGACGCCCAGTGTCTGATGATG
CGAAAATTTGAGAAGCTTCCAGAATCGAAGGTGATCTTCACTGCTGATGTTGCTGTGCTC
GGGTCCATAGTTCCCGATTCTGAGTCCTCGCTGATGCAGTGCTTGGCAGACTGTGCCCGG
GACGAGGCCTGCAGCTTCCTCACAGTGTCCCTGGAGGGCTCGGAGGGCTCCTGTGATTTC
TATGCTTGGACAAGTGACAACATTGCCTGCACGTCCTCCGGTCAGGAGGAAGACGCATTG
GGGACCTCGAAAGCCACCAGCTTGAGAAGTCTCACGTGCCAGGTCAAAGTGAGACCCGGG
GATGGAGTCCCTCCAGCTGTGTACCTGAAAAAGGGCCAAGAATTTGCCACAGTTGGTCGG
AAACGCTTCGAACAAACTGGTTTCCAAAACGCGCTCTCCGGACTGTACAGCCCCGTCGTG
TTCTCGGCCTCGGGAGCCAGTCTGACCGAGGCCCACATCTTCTGTCTCCTCGCCTGTGAC
CGTGATTCCTGTTGCGATGGCTTCATCCTCACACAAGTCCAAGGAGGTCCCATCATCTGT
GGGTTGCTGAGCTCCCCTGACGTCCTGCTTTGCCATGTCAGAGACTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGAGGCTGCCGTGGTCGGAAACGCAGGCCCCCCTGGTGGACGCCCAGTGTCTGATGATG
CGAAAATTTGAGAAGCTTCCAGAATCGAAGGTGATCTTCACTGCTGATGTTGCTGTGCTC
GGGTCCATAGTTCCCGATTCTGAGTCCTCGCTGATGCAGTGCTTGGCAGACTGTGCCCGG
GACGAGGCCTGCAGCTTCCTCACAGTGTCCCTGGAGGGCTCGGAGGGCTCCTGTGATTTC
TATGCTTGGACAAGTGACAACATTGCCTGCACGTCCTCCGGTCAGGAGGAAGACGCATTG
GGGACCTCGAAAGCCACCAGCTTGAGAAGTCTCACGTGCCAGGTCAAAGTGAGACCCGGG
GATGGAGTCCCTCCAGCTGTGTACCTGAAAAAGGGCCAAGAATTTGCCACAGTTGGTCGG
AAACGCTTCGAACAAACTGGTTTCCAAAACGCGCTCTCCGGACTGTACAGCCCCGTCGTG
TTCTCGGCCTCGGGAGCCAGTCTGACCGAGGCCCACATCTTCTGTCTCCTCGCCTGTGAC
CGTGATTCCTGTTGCGATGGCTTCATCCTCACACAAGTCCAAGGAGGTCCCATCATCTGT
GGGTTGCTGAGCTCCCCTGACGTCCTGCTTTGCCATGTCAGAGACTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|8050711|gb|AAF71743.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|8050711|gb|AAF71743.1|

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               56-169, gnl|bosTau2|chr14 (4518450-4518566)
               

               
               56-169, gnl|canFam2|chr13 (32447231-32447559)
               

               
               56-169, gnl|dasNov1|scaffold_104360 (39503-39198)
               

               
               56-169, gnl|echTel1|scaffold_163474 (1127-790)
               

               
               56-169, gnl|hg17|chr8 (134010402-134010743)
               

               
               56-169, gnl|Hg17|chr8 (134010503-134010619)
               

               
               56-169, gnl|loxAfr1|scaffold_164547 (4588-4944)
               

               
               56-169, gnl|mm7|chr15 (66798729-66799040)
               

               
               56-169, gnl|Mm7|chr15 (66798839-66798955)
               

               
               56-169, gnl|oryCun1|scaffold_78678 (645-989)
               

               
               56-169, gnl|panTro1|chr7 (136960331-136960672)
               

               
               56-169, gnl|rheMac2|chr8 (135492432-135492773)
               

               
               56-169, gnl|rn3|chr7 (104116366-104116685)
               


               
               394-588, gnl|bosTau2|chr14 (4526172-4526366)
               

               
               394-588, gnl|Hg17|chr8 (134022777-134022971)
               

               
               394-588, gnl|Mm7|chr15 (66808857-66809051)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               56-169, gnl|bosTau2|chr14 (4518450-4518566)
               

               
               56-169, gnl|canFam2|chr13 (32447231-32447559)
               

               
               56-169, gnl|dasNov1|scaffold_104360 (39503-39198)
               

               
               56-169, gnl|echTel1|scaffold_163474 (1127-790)
               

               
               56-169, gnl|hg17|chr8 (134010402-134010743)
               

               
               56-169, gnl|Hg17|chr8 (134010503-134010619)
               

               
               56-169, gnl|loxAfr1|scaffold_164547 (4588-4944)
               

               
               56-169, gnl|mm7|chr15 (66798729-66799040)
               

               
               56-169, gnl|Mm7|chr15 (66798839-66798955)
               

               
               56-169, gnl|oryCun1|scaffold_78678 (645-989)
               

               
               56-169, gnl|panTro1|chr7 (136960331-136960672)
               

               
               56-169, gnl|rheMac2|chr8 (135492432-135492773)
               

               
               56-169, gnl|rn3|chr7 (104116366-104116685)
               


               
               394-588, gnl|bosTau2|chr14 (4526172-4526366)
               

               
               394-588, gnl|Hg17|chr8 (134022777-134022971)
               

               
               394-588, gnl|Mm7|chr15 (66808857-66809051)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.62448)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.62448)

	56-169, gnl\|bosTau2\|chr14 (4518450-4518566)
	56-169, gnl\|canFam2\|chr13 (32447231-32447559)
	56-169, gnl\|dasNov1\|scaffold_104360 (39503-39198)
	56-169, gnl\|echTel1\|scaffold_163474 (1127-790)
	56-169, gnl\|hg17\|chr8 (134010402-134010743)
	56-169, gnl\|Hg17\|chr8 (134010503-134010619)
	56-169, gnl\|loxAfr1\|scaffold_164547 (4588-4944)
	56-169, gnl\|mm7\|chr15 (66798729-66799040)
	56-169, gnl\|Mm7\|chr15 (66798839-66798955)
	56-169, gnl\|oryCun1\|scaffold_78678 (645-989)
	56-169, gnl\|panTro1\|chr7 (136960331-136960672)
	56-169, gnl\|rheMac2\|chr8 (135492432-135492773)
	56-169, gnl\|rn3\|chr7 (104116366-104116685)

	394-588, gnl\|bosTau2\|chr14 (4526172-4526366)
	394-588, gnl\|Hg17\|chr8 (134022777-134022971)
	394-588, gnl\|Mm7\|chr15 (66808857-66809051)