Non-Coding RNA Search

Ss1.1-rpigcb_5137.5

Sequence:


               
               TTTATTAAGGCAGGACTGTGGGACCACCCCACCTTAGGCTCCTGAACCTACAAGATGAGC
ATTTTTGAAAGTGCATGGTTGATATTACTCAAGATTGGGGAGACAGCATTTTTATATTAA
AATACCACTATAGTTGGAATAAATTCCTTCAGAGTTTTAAAAGAGGCGTTTTTAAGACAG
GAAACATCCTGCTTCTTTACTTCAGTCTCCTAGACCACTCCTCTTCCTCCTTTGCTGATG
AGATGTATTATGTTAATGGACAGGAAAAGCACAGTACTGTAGGGACATCAATACCAGTCA
GTGTATTTTGGAGTGTTTTCAGTTTTACAGTTTATATTCCAGCACTCAGAACTCAGGGTC
AAGTTTTGACAAAAGAGGTATTTAGTTATACTATGTACTAAAATATTATTTCTTCTATCT
TAGATGGTCAAAGTAAATCACACCAATTTCTGACAGTCCAAAAATGAGCTAAGAAGTCCT
ACTTAATATGTACCTGTATTTAATAGGAATTTAATGTAACTTTTGTGATCAGCTTTTGGT
TTGCCAAGAATCGAGAATTCTGATATAAAAGGATCATTTCTACTCACTATGCATTATGAT
CAAATGATGTGATGAATATGGATAAAAATTAAATTACATTAGTGTGAAAAGAGATGTGGG
CTGATAGGTAAGTTGTATGTTACTAACTTAGGACTAACTGGTCTTTTAACCATTGCTTCA
TTTCTAAGACAGGTTTTATGGTATTGGGGGCCTTTTAAACTTATCTTCTGTATTCTTAAT
TTTCCAGTACTTCAAGTCAGAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTATTAAGGCAGGACTGTGGGACCACCCCACCTTAGGCTCCTGAACCTACAAGATGAGC
ATTTTTGAAAGTGCATGGTTGATATTACTCAAGATTGGGGAGACAGCATTTTTATATTAA
AATACCACTATAGTTGGAATAAATTCCTTCAGAGTTTTAAAAGAGGCGTTTTTAAGACAG
GAAACATCCTGCTTCTTTACTTCAGTCTCCTAGACCACTCCTCTTCCTCCTTTGCTGATG
AGATGTATTATGTTAATGGACAGGAAAAGCACAGTACTGTAGGGACATCAATACCAGTCA
GTGTATTTTGGAGTGTTTTCAGTTTTACAGTTTATATTCCAGCACTCAGAACTCAGGGTC
AAGTTTTGACAAAAGAGGTATTTAGTTATACTATGTACTAAAATATTATTTCTTCTATCT
TAGATGGTCAAAGTAAATCACACCAATTTCTGACAGTCCAAAAATGAGCTAAGAAGTCCT
ACTTAATATGTACCTGTATTTAATAGGAATTTAATGTAACTTTTGTGATCAGCTTTTGGT
TTGCCAAGAATCGAGAATTCTGATATAAAAGGATCATTTCTACTCACTATGCATTATGAT
CAAATGATGTGATGAATATGGATAAAAATTAAATTACATTAGTGTGAAAAGAGATGTGGG
CTGATAGGTAAGTTGTATGTTACTAACTTAGGACTAACTGGTCTTTTAACCATTGCTTCA
TTTCTAAGACAGGTTTTATGGTATTGGGGGCCTTTTAAACTTATCTTCTGTATTCTTAAT
TTTCCAGTACTTCAAGTCAGAACT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               124-235, - strand, RNAz p=0.995639

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-235, - strand, RNAz p=0.995639

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               87-631, gnl|bosTau2|chr15 (2428826-2429366)
               

               
               87-631, gnl|Hg17|chr11 (101773683-101773124)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-631, gnl|bosTau2|chr15 (2428826-2429366)
               

               
               87-631, gnl|Hg17|chr11 (101773683-101773124)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cbl (0.45919)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               ece (0.229305)
               

               
               eye (0.170503)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               cty (0.10408)

	87-631, gnl\|bosTau2\|chr15 (2428826-2429366)
	87-631, gnl\|Hg17\|chr11 (101773683-101773124)

	cbl (0.45919)
	ece (0.229305)
	eye (0.170503)
	liv (0.146284)
	ova (0.129132)
	cty (0.10408)