Non-Coding RNA Search

Ss1.1-rpigcb_5216.5

Sequence:


               
               GCAAGCTCACCTACCAGTTTGACAGTGCGCTGCTGCCCGCCGCCCGCCGGGCCTGAGCCC
AGGGCGGTCTCTCGGGGGGGCTCGCAGGGGCCCCCACGCCTGTGTCACGTGGGCGTCCCC
ACACCCTAGGTCATAGGACCCACGGATCCCCCACACTGGTGGCGGGGGCGGGGCGCTACC
ACAGTCCCTAAGCCCTGCCCGGGGCCCCTCTGGGACCTCCCCACTCGTGTCTGGGGCCCC
GAGAGCTTCACGTCGTGGGGCAGAGGACCCATAGACGACTATACTGTGTGTCTGCGTGGA
GGGGCGGGGCAGGGCAGGGCTTCCAGAAAACCTAGAGCCTCTCTGGGATCCCTTGTGATG
CCTGCGATCCCTCAGTTTCATCTAGGGGAGCGTCAGCCCACAGAGCATCACATCAAGAGG
GGGGGGCTCTGCCGGCAACCCTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAAGCTCACCTACCAGTTTGACAGTGCGCTGCTGCCCGCCGCCCGCCGGGCCTGAGCCC
AGGGCGGTCTCTCGGGGGGGCTCGCAGGGGCCCCCACGCCTGTGTCACGTGGGCGTCCCC
ACACCCTAGGTCATAGGACCCACGGATCCCCCACACTGGTGGCGGGGGCGGGGCGCTACC
ACAGTCCCTAAGCCCTGCCCGGGGCCCCTCTGGGACCTCCCCACTCGTGTCTGGGGCCCC
GAGAGCTTCACGTCGTGGGGCAGAGGACCCATAGACGACTATACTGTGTGTCTGCGTGGA
GGGGCGGGGCAGGGCAGGGCTTCCAGAAAACCTAGAGCCTCTCTGGGATCCCTTGTGATG
CCTGCGATCCCTCAGTTTCATCTAGGGGAGCGTCAGCCCACAGAGCATCACATCAAGAGG
GGGGGGCTCTGCCGGCAACCCTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               86-240, - strand, RNAz p=0.999336

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               86-240, - strand, RNAz p=0.999336

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               51-240, gnl|bosTau2|chr18 (49256030-49256218)
               

               
               51-240, gnl|Hg17|chr19 (55623400-55623609)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               51-240, gnl|bosTau2|chr18 (49256030-49256218)
               

               
               51-240, gnl|Hg17|chr19 (55623400-55623609)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lnt (0.142308)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.142308)
               

               
               cty (0.10408)

	51-240, gnl\|bosTau2\|chr18 (49256030-49256218)
	51-240, gnl\|Hg17\|chr19 (55623400-55623609)