Non-Coding RNA Search

Ss1.1-rpigcb_5308.5

Sequence:


               
               GCCCAGAATCCCTGCATGAATTGATGAATCTNTGTTGGAAGAAAGACCCTGATGAAAGAC
CAACATTTGAATATATCCAGTCCTTCTTGGAAGACTACTTCACTGCTACAGAGCCACAGT
ACCAACCGGGAGAAAATTTATAATCCAAGAAGCCTGCCTATTTTATATGCACAAATCTGC
CAAAATGTAAAAGAACTTATGCAGACTTCCATACATACAGGAATCAAAAGAAGAAAGTCT
TCACTCTGCATGTTTTTGGTGGTAAACTGGAATTCCAGACATGGTTGCACAAAACCACTT
TTTTTTTTTTCCAAGTGTTAAACTCTAAAGTACCAATGATGAATTTCCAACTTATATCAG
GGTCCAGAGAAAATATAGTTAAGATATTGATGGCAGTGTGAGTGATAGCATGACAATGAA
GAGCAACAGGCTACTGTTTATAAATCACTCCCTTTCTTTCATTCCCCAAACTTATAATTA
AGAGAAATTTATCAATCATTATAGATAAAACTTGGGAGATTAAAAAGTTGTATACCATAA
TAAAATCCAAAATGAAGGAACTTCATGGGACCAAACAGTTTCATTCCAGTTTTACAGAAT
TTCTTGCATTTATTCTCAAGTTTTTCAACTCAAACAGTTAATATACAATCTTAATATATA
TGCCGCCTTCTGCATGGAAATGGTCCAAGTTTTTAGAAGCAGAAAGGAACCATAAACAGC
ATCTAAAACTTGATTAAATGTTACACAACAACAGTGGAATTTGTATAATGCACTGTGTTA
ATAATACTCAGTGTACTCATAGAACTGGAAAGTAAAGAAATTTTTCACTTTAATCATTTT
CTGAATAGCTCAGTTTAAAATAATGAAGGTAACTAGAAAGTGAATTAGTATTTTATAAGG
TTGCATTGATTTTTTTTAAGGCAATATATAATTGAAATCATACTATCCAATCAAAGGGGA
AATCTTTCAATCTTTAGATAGCATGAAAAAAATAAACCCACCATTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCAGAATCCCTGCATGAATTGATGAATCTNTGTTGGAAGAAAGACCCTGATGAAAGAC
CAACATTTGAATATATCCAGTCCTTCTTGGAAGACTACTTCACTGCTACAGAGCCACAGT
ACCAACCGGGAGAAAATTTATAATCCAAGAAGCCTGCCTATTTTATATGCACAAATCTGC
CAAAATGTAAAAGAACTTATGCAGACTTCCATACATACAGGAATCAAAAGAAGAAAGTCT
TCACTCTGCATGTTTTTGGTGGTAAACTGGAATTCCAGACATGGTTGCACAAAACCACTT
TTTTTTTTTTCCAAGTGTTAAACTCTAAAGTACCAATGATGAATTTCCAACTTATATCAG
GGTCCAGAGAAAATATAGTTAAGATATTGATGGCAGTGTGAGTGATAGCATGACAATGAA
GAGCAACAGGCTACTGTTTATAAATCACTCCCTTTCTTTCATTCCCCAAACTTATAATTA
AGAGAAATTTATCAATCATTATAGATAAAACTTGGGAGATTAAAAAGTTGTATACCATAA
TAAAATCCAAAATGAAGGAACTTCATGGGACCAAACAGTTTCATTCCAGTTTTACAGAAT
TTCTTGCATTTATTCTCAAGTTTTTCAACTCAAACAGTTAATATACAATCTTAATATATA
TGCCGCCTTCTGCATGGAAATGGTCCAAGTTTTTAGAAGCAGAAAGGAACCATAAACAGC
ATCTAAAACTTGATTAAATGTTACACAACAACAGTGGAATTTGTATAATGCACTGTGTTA
ATAATACTCAGTGTACTCATAGAACTGGAAAGTAAAGAAATTTTTCACTTTAATCATTTT
CTGAATAGCTCAGTTTAAAATAATGAAGGTAACTAGAAAGTGAATTAGTATTTTATAAGG
TTGCATTGATTTTTTTTAAGGCAATATATAATTGAAATCATACTATCCAATCAAAGGGGA
AATCTTTCAATCTTTAGATAGCATGAAAAAAATAAACCCACCATTTCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17483901|gb|AAL40241.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17483901|gb|AAL40241.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               200-312, - strand, RNAz p=0.860835

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               200-312, - strand, RNAz p=0.860835

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-932, gnl|bosTau2|chr24 (26024573-26023636)
               

               
               1-932, gnl|Hg17|chr18 (714566-713627)
               

               
               1-932, gnl|Mm7|chr5 (31718836-31719764)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-932, gnl|bosTau2|chr24 (26024573-26023636)
               

               
               1-932, gnl|Hg17|chr18 (714566-713627)
               

               
               1-932, gnl|Mm7|chr5 (31718836-31719764)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)
               

               
               ldo (0.0970026)

	1-932, gnl\|bosTau2\|chr24 (26024573-26023636)
	1-932, gnl\|Hg17\|chr18 (714566-713627)
	1-932, gnl\|Mm7\|chr5 (31718836-31719764)