Non-Coding RNA Search

Ss1.1-rpigcb_5384.5

Sequence:


               
               GATGGGGCAGAGGAAGGCCTGGTTCAGCCACAACCTTCCTAGGCAGGTGCTTCAGGACAG
AGGACAGGCGTGGCTCCCCCTGGGGCCTCCTCAGTAGCTGGTGTCTGAGCTGGGGGAGGA
TAACTCGGAACAGCGGGTCCAAAGAATCTCACACACACACCCAGGCGCCCTTCTCAAGAA
ATGTGGATGGAACAAAACCGTAGGTGATCAAAGCTAGGAAAGACTTTAACCATCATCTAT
GGCAAGATTGGCAAAAAGGTGTCACCTCGCATGCCAACTCCCATCCATCGATTGTGGCTG
CCTAGAGCACTTCATTGGAAAAGATGTTAAGGTCATATCCCATCTCAGCAGAAAAGAACA
CCGTGATTGATTCGTGATGTCTGCCGTGGGTGAGAGAAGGAAGAGGAGCAGCTTCTCCTT
TGCCTGCCTGTACCGATCGAGTCCAGCCCCCTTACTGTGCAGATAAGGAAATAAACCCAG
AAAGGGATAGTGGCTTCGCCAAGGTCAAGGACTGGAACTCAGGCTTCCTGATTCCTCTGT
GTGGTGCTCTGTTCCGTACCCCACACCCACTAACTTCTCAACAGGAAATGTCAGAGGTTT
CCTCAGATAGGAAATCTGGCTGCTTTCCAGAGCACTGCCTCAGGGGGCCCTGGGGGCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATGGGGCAGAGGAAGGCCTGGTTCAGCCACAACCTTCCTAGGCAGGTGCTTCAGGACAG
AGGACAGGCGTGGCTCCCCCTGGGGCCTCCTCAGTAGCTGGTGTCTGAGCTGGGGGAGGA
TAACTCGGAACAGCGGGTCCAAAGAATCTCACACACACACCCAGGCGCCCTTCTCAAGAA
ATGTGGATGGAACAAAACCGTAGGTGATCAAAGCTAGGAAAGACTTTAACCATCATCTAT
GGCAAGATTGGCAAAAAGGTGTCACCTCGCATGCCAACTCCCATCCATCGATTGTGGCTG
CCTAGAGCACTTCATTGGAAAAGATGTTAAGGTCATATCCCATCTCAGCAGAAAAGAACA
CCGTGATTGATTCGTGATGTCTGCCGTGGGTGAGAGAAGGAAGAGGAGCAGCTTCTCCTT
TGCCTGCCTGTACCGATCGAGTCCAGCCCCCTTACTGTGCAGATAAGGAAATAAACCCAG
AAAGGGATAGTGGCTTCGCCAAGGTCAAGGACTGGAACTCAGGCTTCCTGATTCCTCTGT
GTGGTGCTCTGTTCCGTACCCCACACCCACTAACTTCTCAACAGGAAATGTCAGAGGTTT
CCTCAGATAGGAAATCTGGCTGCTTTCCAGAGCACTGCCTCAGGGGGCCCTGGGGGCTGG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               28-660, gnl|bosTau2|chr3 (9828995-9828379)
               

               
               28-660, gnl|Hg17|chr1 (153590112-153589482)
               

               
               28-660, gnl|Mm7|chr3 (87967775-87968322)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               28-660, gnl|bosTau2|chr3 (9828995-9828379)
               

               
               28-660, gnl|Hg17|chr1 (153590112-153589482)
               

               
               28-660, gnl|Mm7|chr3 (87967775-87968322)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               cty (0.10408)

	28-660, gnl\|bosTau2\|chr3 (9828995-9828379)
	28-660, gnl\|Hg17\|chr1 (153590112-153589482)
	28-660, gnl\|Mm7\|chr3 (87967775-87968322)