Ss1.1-rpigcb_5454.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCGCCGCCTGCAGGGCCGCCGCCGCCACCTGCGCCTCCCCTCGTGGGACTGCCTTCGCC TCCGCCCTCTCCTCCCGGCTTCACGCTGCCGCCGCTCGGGGGCGGCCTGGGCGCTGGGGC TGGTACAGGTCGAGGTTCCGAACGGACCCCTGGGACTGCGGCCGCTAACGCTGGAGGGAC CGGGGATGATGGGGCCTGTGGCTGCCTGCCCAACCCGGGCACGTTCGAGGAGTGCCACCG GAAGTGCAAGGAGCTGTTTCCTATTCAGATGGAAGGTGTCAAGCTCACAGTCAACAAAGG TTTGAGTAATCATTTCCAGGTGAACCATACAGTCGCCCTCAGCACAATCGGGGAGTCCAA CTACCACTTTGGGGTCACGTACGTGGGGACAAAGCAGCTGAGTCCCACAGAGGCGTTCCC CGTGCTGGTGGGTGACATGGACAATAGCGGCAGCCTCAATGCTCAGGTCATTCACCAGCT GGGCCCCGGCCTCAGGTCCAAGATGGCCATCCAGACCCAGCAGTCGAAGTTTGTGAACTG GCAGGTGGATGGGGAGTACCGGGGCTCCGACTTCACGGCAGCCGTTACCCTGGGGAACCC AGATGTCCTGGTGGGTTCAGGAATCCTCGTGGCCCACTACCTCCAGAGCATCACGCCGTG TCTGGCGCTGGGCGGAGAGCTGGTCTACCACCGGCGGCCCGGGGAGGAGGGCACCGTTAT GTCACTAGCTGGGAAATACACACTGAACAACTGGTTGGCGACAGTAACACTGGGTCAGGC GGGCATGCACGCGACGTATTACCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCGCCGCCTGCAGGGCCGCCGCCGCCACCTGCGCCTCCCCTCGTGGGACTGCCTTCGCC TCCGCCCTCTCCTCCCGGCTTCACGCTGCCGCCGCTCGGGGGCGGCCTGGGCGCTGGGGC TGGTACAGGTCGAGGTTCCGAACGGACCCCTGGGACTGCGGCCGCTAACGCTGGAGGGAC CGGGGATGATGGGGCCTGTGGCTGCCTGCCCAACCCGGGCACGTTCGAGGAGTGCCACCG GAAGTGCAAGGAGCTGTTTCCTATTCAGATGGAAGGTGTCAAGCTCACAGTCAACAAAGG TTTGAGTAATCATTTCCAGGTGAACCATACAGTCGCCCTCAGCACAATCGGGGAGTCCAA CTACCACTTTGGGGTCACGTACGTGGGGACAAAGCAGCTGAGTCCCACAGAGGCGTTCCC CGTGCTGGTGGGTGACATGGACAATAGCGGCAGCCTCAATGCTCAGGTCATTCACCAGCT GGGCCCCGGCCTCAGGTCCAAGATGGCCATCCAGACCCAGCAGTCGAAGTTTGTGAACTG GCAGGTGGATGGGGAGTACCGGGGCTCCGACTTCACGGCAGCCGTTACCCTGGGGAACCC AGATGTCCTGGTGGGTTCAGGAATCCTCGTGGCCCACTACCTCCAGAGCATCACGCCGTG TCTGGCGCTGGGCGGAGAGCTGGTCTACCACCGGCGGCCCGGGGAGGAGGGCACCGTTAT GTCACTAGCTGGGAAATACACACTGAACAACTGGTTGGCGACAGTAACACTGGGTCAGGC GGGCATGCACGCGACGTATTACCA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 2-251, gnl|bosTau2|chr18 (38895792-38895543) | |
| 2-251, gnl|Hg17|chr19 (50086537-50086786) | |
| 2-251, gnl|Mm7|chr7 (17397604-17397355) | |
| 512-621, gnl|bosTau2|chr18 (38892073-38891963) | |
| 512-621, gnl|canFam2|chr1 (113428335-113428401) | |
| 512-621, gnl|canFam2|chr1 (113428335-113428401) | |
| 512-621, gnl|danRer3|chr3 (36535234-36535297) | |
| 512-621, gnl|danRer3|chr3 (36535234-36535297) | |
| 512-621, gnl|dasNov1|scaffold_178091 (517-580) | |
| 512-621, gnl|dasNov1|scaffold_178091 (517-580) | |
| 512-621, gnl|echTel1|scaffold_269670 (709-770) | |
| 512-621, gnl|echTel1|scaffold_269670 (712-770) | |
| 512-621, gnl|fr1|chrUn (71307461-71307398) | |
| 512-621, gnl|fr1|chrUn (71307461-71307398) | |
| 512-621, gnl|galGal2|chrUn (139845604-139845538) | |
| 512-621, gnl|hg17|chr14 (18789986-18790051) | |
| 512-621, gnl|Hg17|chr19 (50089055-50089164) | |
| 512-621, gnl|hg17|chr2 (132314942-132315008) | |
| 512-621, gnl|loxAfr1|scaffold_87584 (29511-29574) | |
| 512-621, gnl|mm7|chr7 (17393107-17393173) | |
| 512-621, gnl|mm7|chr7 (17393107-17393173) | |
| 512-621, gnl|Mm7|chr7 (17393215-17393106) | |
| 512-621, gnl|monDom2|scaffold_221 (188502-188565) | |
| 512-621, gnl|monDom2|scaffold_221 (188502-188565) | |
| 512-621, gnl|oryCun1|scaffold_187307 (12822-12756) | |
| 512-621, gnl|oryCun1|scaffold_187307 (12822-12756) | |
| 512-621, gnl|panTro1|chr13 (18281037-18281103) | |
| 512-621, gnl|panTro1|chr13 (18281037-18281103) | |
| 512-621, gnl|rheMac2|chr19 (51321446-51321380) | |
| 512-621, gnl|rheMac2|chr6 (33605257-33605191) | |
| 512-621, gnl|rn3|chr1 (79094537-79094603) | |
| 512-621, gnl|rn3|chr1 (79094537-79094603) | |
| 512-621, gnl|tetNig1|chrUn_random (91396178-91396241) | |
| 512-621, gnl|xenTro1|scaffold_837 (42007-41941) | |
| 512-621, gnl|xenTro1|scaffold_837 (42007-41941) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-251, gnl|bosTau2|chr18 (38895792-38895543) | |
| 2-251, gnl|Hg17|chr19 (50086537-50086786) | |
| 2-251, gnl|Mm7|chr7 (17397604-17397355) | |
| 512-621, gnl|bosTau2|chr18 (38892073-38891963) | |
| 512-621, gnl|canFam2|chr1 (113428335-113428401) | |
| 512-621, gnl|canFam2|chr1 (113428335-113428401) | |
| 512-621, gnl|danRer3|chr3 (36535234-36535297) | |
| 512-621, gnl|danRer3|chr3 (36535234-36535297) | |
| 512-621, gnl|dasNov1|scaffold_178091 (517-580) | |
| 512-621, gnl|dasNov1|scaffold_178091 (517-580) | |
| 512-621, gnl|echTel1|scaffold_269670 (709-770) | |
| 512-621, gnl|echTel1|scaffold_269670 (712-770) | |
| 512-621, gnl|fr1|chrUn (71307461-71307398) | |
| 512-621, gnl|fr1|chrUn (71307461-71307398) | |
| 512-621, gnl|galGal2|chrUn (139845604-139845538) | |
| 512-621, gnl|hg17|chr14 (18789986-18790051) | |
| 512-621, gnl|Hg17|chr19 (50089055-50089164) | |
| 512-621, gnl|hg17|chr2 (132314942-132315008) | |
| 512-621, gnl|loxAfr1|scaffold_87584 (29511-29574) | |
| 512-621, gnl|mm7|chr7 (17393107-17393173) | |
| 512-621, gnl|mm7|chr7 (17393107-17393173) | |
| 512-621, gnl|Mm7|chr7 (17393215-17393106) | |
| 512-621, gnl|monDom2|scaffold_221 (188502-188565) | |
| 512-621, gnl|monDom2|scaffold_221 (188502-188565) | |
| 512-621, gnl|oryCun1|scaffold_187307 (12822-12756) | |
| 512-621, gnl|oryCun1|scaffold_187307 (12822-12756) | |
| 512-621, gnl|panTro1|chr13 (18281037-18281103) | |
| 512-621, gnl|panTro1|chr13 (18281037-18281103) | |
| 512-621, gnl|rheMac2|chr19 (51321446-51321380) | |
| 512-621, gnl|rheMac2|chr6 (33605257-33605191) | |
| 512-621, gnl|rn3|chr1 (79094537-79094603) | |
| 512-621, gnl|rn3|chr1 (79094537-79094603) | |
| 512-621, gnl|tetNig1|chrUn_random (91396178-91396241) | |
| 512-621, gnl|xenTro1|scaffold_837 (42007-41941) | |
| 512-621, gnl|xenTro1|scaffold_837 (42007-41941) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cty (0.20816) | |
| nje (0.16592) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| ese (0.126502) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| nje (0.16592) | |
| nco (0.161734) | |
| hyp (0.142837) | |
| ese (0.126502) |