Non-Coding RNA Search

Ss1.1-rpigcb_5460.5

Sequence:


               
               TTTGCTTTCCCGGTCCTGCGATGATTCCGGTTCCTCCAGAACATTGGTGGCGGGAGGCCA
GTCCTGAGGTCAGGTTCTGAGCAGTAGAGCCGCTATGAGCACCTCGGGTCTGCTCCGATT
TCCCGCCCACCTGGCCAGGATATGCACGGTGCCAAGGGGGCTCAGGCTCTGCCAAAAGCC
GGCGCTCCTAACCCCGGGAACAGCAGGTGCTCCAGTGCAGGCAGCAGGCAAGAAGGACCG
CCCTGCTCTGCTCTCCCTGGATGAGCGTGAACTTGAAGAGCAGTTTGTAAAAGGACATGG
TCCAGGGGGCCAGGCAACCAACAAAACAAGCAACTGCGTGGTGCTGAGGCACATCCCCTC
GGGCATCGTGGTCAAGTGTCACCAGACAAGATCCGTTGACCAAAACAGAAAGCTAGCTCG
GAGAATCCTGCAAGAGAAAGTGGATGTTTTCTACAATGGTGAAAACAGTCCTGTTTACAA
AGAAAAACGAGAGGCAGAGAAGAGAAAGCAAGAGAGGAAAAAAAGAGCAAAGGAAACACT
AGAGAAAAAGAAACTCCTGAAAGAACAATGGGAATCAAGTAAAAATGTGCCCAGAGAAAG
GACCACGAGTTCTGACTGGAAGAACGTGCCAGACGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGCTTTCCCGGTCCTGCGATGATTCCGGTTCCTCCAGAACATTGGTGGCGGGAGGCCA
GTCCTGAGGTCAGGTTCTGAGCAGTAGAGCCGCTATGAGCACCTCGGGTCTGCTCCGATT
TCCCGCCCACCTGGCCAGGATATGCACGGTGCCAAGGGGGCTCAGGCTCTGCCAAAAGCC
GGCGCTCCTAACCCCGGGAACAGCAGGTGCTCCAGTGCAGGCAGCAGGCAAGAAGGACCG
CCCTGCTCTGCTCTCCCTGGATGAGCGTGAACTTGAAGAGCAGTTTGTAAAAGGACATGG
TCCAGGGGGCCAGGCAACCAACAAAACAAGCAACTGCGTGGTGCTGAGGCACATCCCCTC
GGGCATCGTGGTCAAGTGTCACCAGACAAGATCCGTTGACCAAAACAGAAAGCTAGCTCG
GAGAATCCTGCAAGAGAAAGTGGATGTTTTCTACAATGGTGAAAACAGTCCTGTTTACAA
AGAAAAACGAGAGGCAGAGAAGAGAAAGCAAGAGAGGAAAAAAAGAGCAAAGGAAACACT
AGAGAAAAAGAAACTCCTGAAAGAACAATGGGAATCAAGTAAAAATGTGCCCAGAGAAAG
GACCACGAGTTCTGACTGGAAGAACGTGCCAGACGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61886963|ref|XP_584238.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61886963|ref|XP_584238.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               414-533, + strand, RNAz p=0.999267

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               414-533, + strand, RNAz p=0.999267

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               375-630, gnl|bosTau2|chr17 (26328954-26329207)
               

               
               375-630, gnl|Hg17|chr12 (122266238-122266494)
               

               
               375-630, gnl|Mm7|chr5 (123586470-123586716)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               375-630, gnl|bosTau2|chr17 (26328954-26329207)
               

               
               375-630, gnl|Hg17|chr12 (122266238-122266494)
               

               
               375-630, gnl|Mm7|chr5 (123586470-123586716)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cte (0.58548)
               

               
               tes (0.415628)
               

               
               cje (0.330469)
               

               
               hea (0.204499)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               tes (0.415628)
               

               
               cje (0.330469)
               

               
               hea (0.204499)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	375-630, gnl\|bosTau2\|chr17 (26328954-26329207)
	375-630, gnl\|Hg17\|chr12 (122266238-122266494)
	375-630, gnl\|Mm7\|chr5 (123586470-123586716)

	cte (0.58548)
	tes (0.415628)
	cje (0.330469)
	hea (0.204499)
	eye (0.170503)
	cki (0.165235)
	ese (0.126502)
	bla (0.124347)
	cty (0.10408)
	ldo (0.0970026)