Non-Coding RNA Search

Ss1.1-rpigcb_5474.5

Sequence:


               
               ATTTTTTTTCTTCTCTCAAAGTGATTCAGTTAATTATGTCCATCTATTCATAATTATAAG
GTGGATGAGTCGGATAAAACTGAAATTATGAAATCTGCAGAGATTCAACGAGGTTTAGAA
CGTACAATGTAAAAAAGGATTGAGTAAGTCAGAGCATTGTAATACTTTGTTTTAATCCCC
CTCAGCCCACCCCACCCCAACTGCTTTCTCACAGGGTTTTATATACTTACTTTTTTCACT
TGTCATTTGTAATCCAACAACTTGCTAAAATTGATTTGAGGTAAGCTCATAGTGATTGAT
AATACTCACAATAAAGCAAACACCACAAATACTAATAACACTTGACTAATGTGTCCAAAA
CTATTTTTAATTGAAAAAAACTTTAAAATAACATATCGTCATTTAAAGGTTAACTCTTCA
AATAGTAAAGGGAGAAATTTCCTTTCACCCACTGACCACCATCCAAGTTCTCCTACTGAT
GTACCTACTTTAGCAGCTCTCTTATATGTTCTCATTCCACCTTTTCAAGTCCTTTCTTAT
TACAGTCCTTCCCATATTTTACTTGCATATTCTATTCATAAGTACGCTACACAATATTAT
GTTTCAAGCATTTTATTTTATTTTCTCCAGACAGATTTTCTAGCTCAATAACTTTTTTTA
GCCTTTAAAATTATGTTTTTGGATTTTTTTTAGTTAAATGAAAGTACAATCTACCTTAAT
TTTTCTTTTAGCTAAGACCAAAGCACATTCAACTTTTTACTCAAACCATTGAGTGATGCC
AAAAATTCCTCTGCCAAATGCTATAATGAAGGCAACCCATTATCAAATGACATAGCTCAT
GTGTTAAACCCAACCTGTGATACTACAAAATTGGAAATAGCCCCAATTAGTGATTGTTCA
TCTAATCTTGGTAAATGATGTTCTCACATAGCAAGCAGATACTAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTTTTTCTTCTCTCAAAGTGATTCAGTTAATTATGTCCATCTATTCATAATTATAAG
GTGGATGAGTCGGATAAAACTGAAATTATGAAATCTGCAGAGATTCAACGAGGTTTAGAA
CGTACAATGTAAAAAAGGATTGAGTAAGTCAGAGCATTGTAATACTTTGTTTTAATCCCC
CTCAGCCCACCCCACCCCAACTGCTTTCTCACAGGGTTTTATATACTTACTTTTTTCACT
TGTCATTTGTAATCCAACAACTTGCTAAAATTGATTTGAGGTAAGCTCATAGTGATTGAT
AATACTCACAATAAAGCAAACACCACAAATACTAATAACACTTGACTAATGTGTCCAAAA
CTATTTTTAATTGAAAAAAACTTTAAAATAACATATCGTCATTTAAAGGTTAACTCTTCA
AATAGTAAAGGGAGAAATTTCCTTTCACCCACTGACCACCATCCAAGTTCTCCTACTGAT
GTACCTACTTTAGCAGCTCTCTTATATGTTCTCATTCCACCTTTTCAAGTCCTTTCTTAT
TACAGTCCTTCCCATATTTTACTTGCATATTCTATTCATAAGTACGCTACACAATATTAT
GTTTCAAGCATTTTATTTTATTTTCTCCAGACAGATTTTCTAGCTCAATAACTTTTTTTA
GCCTTTAAAATTATGTTTTTGGATTTTTTTTAGTTAAATGAAAGTACAATCTACCTTAAT
TTTTCTTTTAGCTAAGACCAAAGCACATTCAACTTTTTACTCAAACCATTGAGTGATGCC
AAAAATTCCTCTGCCAAATGCTATAATGAAGGCAACCCATTATCAAATGACATAGCTCAT
GTGTTAAACCCAACCTGTGATACTACAAAATTGGAAATAGCCCCAATTAGTGATTGTTCA
TCTAATCTTGGTAAATGATGTTCTCACATAGCAAGCAGATACTAATTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-942, gnl|bosTau2|chr21 (31309528-31308611)
               

               
               1-942, gnl|Hg17|chr14 (36003033-36002086)
               

               
               1-942, gnl|Mm7|chr12 (54412461-54411033)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-942, gnl|bosTau2|chr21 (31309528-31308611)
               

               
               1-942, gnl|Hg17|chr14 (36003033-36002086)
               

               
               1-942, gnl|Mm7|chr12 (54412461-54411033)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.20816)
               

               
               liv (0.146284)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               liv (0.146284)

	1-942, gnl\|bosTau2\|chr21 (31309528-31308611)
	1-942, gnl\|Hg17\|chr14 (36003033-36002086)
	1-942, gnl\|Mm7\|chr12 (54412461-54411033)