Non-Coding RNA Search

Ss1.1-rpigcb_5487.5

Sequence:


               
               AGTAAGTTAGACAGCGAAGACAAATATTATGTGATATGGTTTATATGTGGAATATAAAGA
ATAGTACAAATGAACTTATTTGCGAAACAGAAACAGACTCACGGACATAGAAAACGAATG
TGTGGTTACCAAAGGGGAAAAATAGTGAGGGAGCGATAGCTAATTAGGAGTTTGGGATTA
AGAAACACACACCACTATATGTAAAGCAGATTGCCCTAAGGGAAGGGGGGTGGCCTGAGA
CAGACAATGAAGAAAAACATTTCAGGCAGCCTGGTCCTCGGATGGGAGAGCTTCCAGGGA
AACCAGGAACATCTGGCCATCCTGCTGCCCCATCACGCCCCGCACTCAATTCTGCTGCTG
CATATCATCTGGGCAGCTCCGCAGCCAGCAGCTTTCTTCTGGCTGCAGCTTCAAGCTCTT
AACTTTCTGAATGTGTTCATACAAGTCCTGCAATGGCTTCATTCAAAGTAGAAAGAATGG
GTTCCCCTTGTGGCTCTGTGGTAAAAAACCAACCCGATTAGTATCTTTGAGGGTGCAGGT
TCGATCCCTGGCCTCGCCCAGTGGGTTAAGGATCCAGCATGGCCGCCAGCTTTGGTGTAG
GGTAGCAGTTGTGGCCCGGGAACTTCCATATGCCGCAGGTGTGGCTGTAACAAACAAACA
CAAAGTAGAAATAATTGTTTGATAGCTTTTCTAGATCCTCTCACCATTTTGAGACCCCAA
AACAGGAGAAGCAATTGAATGATTTCATCACTGTGAGGAAGAATAATTCATTTAAAAACT
CGAAGATGAGGAGTTCCTGCCATGGCTCAGTGGTAATGAAACTGACTAGTATCCCTAAGG
ATGCGGGTTTGATTCCTGGCCTTGCTCAGTGGATTAGGGATCAGGCGTTGCTGTGGCTGT
GGTGTAGGCCCTCAGCTGTAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAAGTTAGACAGCGAAGACAAATATTATGTGATATGGTTTATATGTGGAATATAAAGA
ATAGTACAAATGAACTTATTTGCGAAACAGAAACAGACTCACGGACATAGAAAACGAATG
TGTGGTTACCAAAGGGGAAAAATAGTGAGGGAGCGATAGCTAATTAGGAGTTTGGGATTA
AGAAACACACACCACTATATGTAAAGCAGATTGCCCTAAGGGAAGGGGGGTGGCCTGAGA
CAGACAATGAAGAAAAACATTTCAGGCAGCCTGGTCCTCGGATGGGAGAGCTTCCAGGGA
AACCAGGAACATCTGGCCATCCTGCTGCCCCATCACGCCCCGCACTCAATTCTGCTGCTG
CATATCATCTGGGCAGCTCCGCAGCCAGCAGCTTTCTTCTGGCTGCAGCTTCAAGCTCTT
AACTTTCTGAATGTGTTCATACAAGTCCTGCAATGGCTTCATTCAAAGTAGAAAGAATGG
GTTCCCCTTGTGGCTCTGTGGTAAAAAACCAACCCGATTAGTATCTTTGAGGGTGCAGGT
TCGATCCCTGGCCTCGCCCAGTGGGTTAAGGATCCAGCATGGCCGCCAGCTTTGGTGTAG
GGTAGCAGTTGTGGCCCGGGAACTTCCATATGCCGCAGGTGTGGCTGTAACAAACAAACA
CAAAGTAGAAATAATTGTTTGATAGCTTTTCTAGATCCTCTCACCATTTTGAGACCCCAA
AACAGGAGAAGCAATTGAATGATTTCATCACTGTGAGGAAGAATAATTCATTTAAAAACT
CGAAGATGAGGAGTTCCTGCCATGGCTCAGTGGTAATGAAACTGACTAGTATCCCTAAGG
ATGCGGGTTTGATTCCTGGCCTTGCTCAGTGGATTAGGGATCAGGCGTTGCTGTGGCTGT
GGTGTAGGCCCTCAGCTGTAGCTC

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-221, gnl|bosTau2|chr16 (8323156-8322939)
               


               
               3-205, gnl|bosTau2|chr12 (8869086-8868888)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr16 (8323156-8322939)
               


               
               3-205, gnl|bosTau2|chr12 (8869086-8868888)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.41632)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.41632)

	1-221, gnl\|bosTau2\|chr16 (8323156-8322939)

	3-205, gnl\|bosTau2\|chr12 (8869086-8868888)