Non-Coding RNA Search

Ss1.1-rpigcb_5914.5

Sequence:


               
               TTTCTTGGTTTTGAAATTTATTTCCCTTTTGGTTTTTGTTGTTGTTTTATTTTTGATTTT
AGGAGTTTGTTGGAAGCTGTTTCCTGTTTGGCTTTGGTGGGTAGTTCTCTCTGACTAGAG
ATAGAAGTGCCGTTTAAGTTTTCCCCACCTGTTACACTGAACTTTTTTCTACCATGCACT
ACCTTATTTGCAAGGTGTCCATCTTATCCATCCCCCAGTGCCTCTAAATATGTGGTACTT
ATGTAACTAACAACAGTTTGCTTAAGCCATTGCCACGTACCTCCTACTTTTTTTCTTTCA
ATGAGCTTTTCATAAATAGTTAGATTCAGATTCTGGCTTATGGCTCCAATTCCACAGTCC
TAACAGGGTCCTGTATGTTCTTTAATGCAATCTTCCTACCCGGCATTCACTGTTGTTACC
TAGCCAAAGAGAAGACTGGTTCTTCTCCATCACCAGCATGTTGATTGCTTTTAAAGTGTT
ACTTAGTGTTTTATGTTTTGTTAGAATATATTGGCAGTGTAGTATCTGAGAGAATGTCTT
TAACGGATTTTTAGAAATGTGTATTTACTCTATAAAATTAGCTATTCTCCATCCACCAGG
CTGTGCTTGTTTCCAATGCCTGATGCACATATCCCCCCCTTTCTTAGAGCCAGCCTGGCC
TGGGCATAGTGAACAGCTTTATTTTCCTCTTGCCACTTTCTCTACAGTACTTTATAGACC
ATGCCATCTCTGTCGCCTACATGGGTAGTGCTCAGTCGTCTCTAGTAATCAAAAGATGTG
GAGCTGAAGCATCTATGGGGAAGTTTGACTACCTTTGCTTTCTGATTCATGTTTTGTGTG
CATGCAACAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTCTTGGTTTTGAAATTTATTTCCCTTTTGGTTTTTGTTGTTGTTTTATTTTTGATTTT
AGGAGTTTGTTGGAAGCTGTTTCCTGTTTGGCTTTGGTGGGTAGTTCTCTCTGACTAGAG
ATAGAAGTGCCGTTTAAGTTTTCCCCACCTGTTACACTGAACTTTTTTCTACCATGCACT
ACCTTATTTGCAAGGTGTCCATCTTATCCATCCCCCAGTGCCTCTAAATATGTGGTACTT
ATGTAACTAACAACAGTTTGCTTAAGCCATTGCCACGTACCTCCTACTTTTTTTCTTTCA
ATGAGCTTTTCATAAATAGTTAGATTCAGATTCTGGCTTATGGCTCCAATTCCACAGTCC
TAACAGGGTCCTGTATGTTCTTTAATGCAATCTTCCTACCCGGCATTCACTGTTGTTACC
TAGCCAAAGAGAAGACTGGTTCTTCTCCATCACCAGCATGTTGATTGCTTTTAAAGTGTT
ACTTAGTGTTTTATGTTTTGTTAGAATATATTGGCAGTGTAGTATCTGAGAGAATGTCTT
TAACGGATTTTTAGAAATGTGTATTTACTCTATAAAATTAGCTATTCTCCATCCACCAGG
CTGTGCTTGTTTCCAATGCCTGATGCACATATCCCCCCCTTTCTTAGAGCCAGCCTGGCC
TGGGCATAGTGAACAGCTTTATTTTCCTCTTGCCACTTTCTCTACAGTACTTTATAGACC
ATGCCATCTCTGTCGCCTACATGGGTAGTGCTCAGTCGTCTCTAGTAATCAAAAGATGTG
GAGCTGAAGCATCTATGGGGAAGTTTGACTACCTTTGCTTTCTGATTCATGTTTTGTGTG
CATGCAACAGTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-852, gnl|bosTau2|chr4 (4263412-4262555)
               

               
               1-852, gnl|Hg17|chr7 (91888210-91887329)
               

               
               1-852, gnl|Mm7|chr5 (3527680-3528502)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr4 (4263412-4262555)
               

               
               1-852, gnl|Hg17|chr7 (91888210-91887329)
               

               
               1-852, gnl|Mm7|chr5 (3527680-3528502)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-852, gnl\|bosTau2\|chr4 (4263412-4262555)
	1-852, gnl\|Hg17\|chr7 (91888210-91887329)
	1-852, gnl\|Mm7\|chr5 (3527680-3528502)