Non-Coding RNA Search

Ss1.1-rpigcb_6103.5

Sequence:


               
               GGAACAGCAGCCTGCCTTTATCAGTGTTACTTACTTGTCTACTACACCGGCTGGCGGAAT
GTCAAATCTTTTTTGACTTTTGGCTTAATCTGTCTATGCAACATGTATCTCTATGAACTG
CGCAACCTCTGGCAGCTTTTCTTTCATGTGACTGTGGGAGCATTTGTTACACTACAGATC
TGGCTAAGGCAAGCCCAGGGCAAGGCTCCTGATTATGATGTCTGACACCATCCTTCAGAC
TATTGCCTTGGCTTCAGGGGAAGGAGGAGGGAGCATATCTTAACTACCACTGTGATGAAG
AACCTGTTCACCACAAAGAAGCTCTGTTTTCTCTCTCTCCAACTGTCTTTTTTGCTTTAA
GTCAGCATAGCATGCCTGTGAGCATGCATTACCTGTTAGGCAAACTTCTCTCAGCAGAAT
GTTGGCCATGAGGTTATCATTTGGAAGATGAGGAGACGCCATGGCAGTGGAAGAATAGTC
AGTCACCATTGGAAGACTTGGCCAGCAGCCGTGGCTGGAGGGTTGAGTCAAAAAGTATGT
GTGGTACTTTCTCTGAGAACCAAGCAGGAGCTCTACAACCCCAGTTTGCCTTTGTGAGGC
ATTAGTGTAGACCAAATAAAAAGATGCTGCAGTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACAGCAGCCTGCCTTTATCAGTGTTACTTACTTGTCTACTACACCGGCTGGCGGAAT
GTCAAATCTTTTTTGACTTTTGGCTTAATCTGTCTATGCAACATGTATCTCTATGAACTG
CGCAACCTCTGGCAGCTTTTCTTTCATGTGACTGTGGGAGCATTTGTTACACTACAGATC
TGGCTAAGGCAAGCCCAGGGCAAGGCTCCTGATTATGATGTCTGACACCATCCTTCAGAC
TATTGCCTTGGCTTCAGGGGAAGGAGGAGGGAGCATATCTTAACTACCACTGTGATGAAG
AACCTGTTCACCACAAAGAAGCTCTGTTTTCTCTCTCTCCAACTGTCTTTTTTGCTTTAA
GTCAGCATAGCATGCCTGTGAGCATGCATTACCTGTTAGGCAAACTTCTCTCAGCAGAAT
GTTGGCCATGAGGTTATCATTTGGAAGATGAGGAGACGCCATGGCAGTGGAAGAATAGTC
AGTCACCATTGGAAGACTTGGCCAGCAGCCGTGGCTGGAGGGTTGAGTCAAAAAGTATGT
GTGGTACTTTCTCTGAGAACCAAGCAGGAGCTCTACAACCCCAGTTTGCCTTTGTGAGGC
ATTAGTGTAGACCAAATAAAAAGATGCTGCAGTGAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               136-253, - strand, RNAz p=0.72565
               

               
               521-636, - strand, RNAz p=0.566858

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               136-253, - strand, RNAz p=0.72565
               

               
               521-636, - strand, RNAz p=0.566858

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-636, gnl|bosTau2|chr1 (42073668-42073044)
               

               
               17-636, gnl|Hg17|chr3 (124473051-124473671)
               

               
               17-636, gnl|Mm7|chr16 (34988913-34988312)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-636, gnl|bosTau2|chr1 (42073668-42073044)
               

               
               17-636, gnl|Hg17|chr3 (124473051-124473671)
               

               
               17-636, gnl|Mm7|chr16 (34988913-34988312)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               duo (0.172801)
               

               
               csk (0.140746)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               csk (0.140746)
               

               
               cty (0.10408)

	136-253, - strand, RNAz p=0.72565
	521-636, - strand, RNAz p=0.566858

	17-636, gnl\|bosTau2\|chr1 (42073668-42073044)
	17-636, gnl\|Hg17\|chr3 (124473051-124473671)
	17-636, gnl\|Mm7\|chr16 (34988913-34988312)