Ss1.1-rpigcb_6143.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCTCACATCAGCACCATGACATCTGCAGTTACTTGCTGTTGGTCCTCAGACACA TTTAAGAGAAAGAGACTGTAGCTCTTTTTTCTTAAAATGATAGACACATAGACAGTTATT TTTATGCTACTACAATTGTCTTTTATCTTTACCTAGTACTATGTGGAAAGGGTTTGCATC ATAGATTTTTTTCCCAGCCTTATAATATACCGTAAGCTCCTACNCCCC------------ CTCTCTAATCAGTATCCCTTCAAGAGTTCTTTGGTGAAACTGTCTCTGAAACTAAAAGGA ATCCAATCCCCATCTCGGTGGTTTGAGATAACCACGGCCAAGACAGCGGTGGAAGGTTTT AGTCTTGAGACTGAGCTTCTAAGAAGGGAGGTGTTAGAGGCTTTTCCCAAGAGCTGCTTT GTTTCTGGGAGAGGCATTCAGCGTGCCTGGCTCTTGCTGGACATGGCTTGCAATGCCACA GGGCGTCCCGGGGGGGAAACCATCGCCCAGAACGGCGTCTTGCCTGGGGGACAGCTGCAG GCTGTGGGCTCTGGTGCATGAGAACCTGTCCAGGTGGCTTTTGTGCCCAGCTCCGTCCTG GGACGCAGCAGGACTGCTCCCCATCACAGATACCCCACTCCACGTGGGTGGACCCTCTGC CTCTCTCACTCATCGAAGGGCTCTCGGAGAAGGAATCAGAGTTAGGTACCAAGCGACCTC TGTTGGGAGAGTTTTCCGTGTGGGATTGAATTCAATTCAATGTGACTCCTCTTTCCCTTT AAACTTGATTCAGGTTGGGACTCTTGTTTCTTTCTGGTGGATCACAGCTGCCCAGATGTT GCCATTTGATTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCTCACATCAGCACCATGACATCTGCAGTTACTTGCTGTTGGTCCTCAGACACA TTTAAGAGAAAGAGACTGTAGCTCTTTTTTCTTAAAATGATAGACACATAGACAGTTATT TTTATGCTACTACAATTGTCTTTTATCTTTACCTAGTACTATGTGGAAAGGGTTTGCATC ATAGATTTTTTTCCCAGCCTTATAATATACCGTAAGCTCCTACNCCCC------------ CTCTCTAATCAGTATCCCTTCAAGAGTTCTTTGGTGAAACTGTCTCTGAAACTAAAAGGA ATCCAATCCCCATCTCGGTGGTTTGAGATAACCACGGCCAAGACAGCGGTGGAAGGTTTT AGTCTTGAGACTGAGCTTCTAAGAAGGGAGGTGTTAGAGGCTTTTCCCAAGAGCTGCTTT GTTTCTGGGAGAGGCATTCAGCGTGCCTGGCTCTTGCTGGACATGGCTTGCAATGCCACA GGGCGTCCCGGGGGGGAAACCATCGCCCAGAACGGCGTCTTGCCTGGGGGACAGCTGCAG GCTGTGGGCTCTGGTGCATGAGAACCTGTCCAGGTGGCTTTTGTGCCCAGCTCCGTCCTG GGACGCAGCAGGACTGCTCCCCATCACAGATACCCCACTCCACGTGGGTGGACCCTCTGC CTCTCTCACTCATCGAAGGGCTCTCGGAGAAGGAATCAGAGTTAGGTACCAAGCGACCTC TGTTGGGAGAGTTTTCCGTGTGGGATTGAATTCAATTCAATGTGACTCCTCTTTCCCTTT AAACTTGATTCAGGTTGGGACTCTTGTTTCTTTCTGGTGGATCACAGCTGCCCAGATGTT GCCATTTGATTC |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 14-243, gnl|bosTau2|chr10 (68416054-68415824) | |
| 14-243, gnl|canFam2|chr8 (63368687-63368458) | |
| 14-243, gnl|dasNov1|scaffold_8792 (29910-30137) | |
| 14-243, gnl|hg17|chr1 (110548567-110548802) | |
| 14-243, gnl|Hg17|chr14 (88694904-88694673) | |
| 14-243, gnl|mm7|chr12 (96687661-96687442) | |
| 14-243, gnl|Mm7|chr12 (96687579-96687347) | |
| 14-243, gnl|monDom2|scaffold_8 (38063510-38063688) | |
| 14-243, gnl|oryCun1|scaffold_146169 (4772-4997) | |
| 14-243, gnl|panTro1|chr1 (111734381-111734146) | |
| 14-243, gnl|rheMac2|chr7 (152360216-152359980) | |
| 14-243, gnl|rn3|chr6 (123387574-123387359) | |
| 247-467, gnl|bosTau2|chr10 (68415802-68415578) | |
| 247-467, gnl|canFam2|chr8 (63368110-63368457) | |
| 247-467, gnl|canFam2|chr8 (63368457-63368060) | |
| 247-467, gnl|dasNov1|scaffold_8792 (30470-30138) | |
| 247-467, gnl|dasNov1|scaffold_8792 (30138-30516) | |
| 247-467, gnl|echTel1|scaffold_305909 (3695-3330) | |
| 247-467, gnl|echTel1|scaffold_305909 (3330-3740) | |
| 247-467, gnl|hg17|chr1 (110548803-110549238) | |
| 247-467, gnl|hg17|chr14 (88694374-88694761) | |
| 247-467, gnl|Hg17|chr14 (88694667-88694440) | |
| 247-467, gnl|loxAfr1|scaffold_187 (63678-64064) | |
| 247-467, gnl|loxAfr1|scaffold_187 (64064-63629) | |
| 247-467, gnl|mm7|chr12 (96687059-96687441) | |
| 247-467, gnl|mm7|chr12 (96687441-96687026) | |
| 247-467, gnl|Mm7|chr12 (96687332-96687106) | |
| 247-467, gnl|monDom2|scaffold_8 (38064096-38063696) | |
| 247-467, gnl|monDom2|scaffold_8 (38063689-38064149) | |
| 247-467, gnl|oryCun1|scaffold_146169 (4998-5408) | |
| 247-467, gnl|oryCun1|scaffold_185984 (43662-44007) | |
| 247-467, gnl|panTro1|chr1 (111734145-111733711) | |
| 247-467, gnl|panTro1|chr15 (88952291-88952677) | |
| 247-467, gnl|rheMac2|chr7 (152359589-152359979) | |
| 247-467, gnl|rheMac2|chr7 (152359979-152359538) | |
| 247-467, gnl|rn3|chr6 (123386990-123387358) | |
| 247-467, gnl|rn3|chr6 (123387358-123386957) | |
| 514-835, gnl|bosTau2|chr10 (68415560-68415245) | |
| 514-835, gnl|Hg17|chr14 (88694394-88694070) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-243, gnl|bosTau2|chr10 (68416054-68415824) | |
| 14-243, gnl|canFam2|chr8 (63368687-63368458) | |
| 14-243, gnl|dasNov1|scaffold_8792 (29910-30137) | |
| 14-243, gnl|hg17|chr1 (110548567-110548802) | |
| 14-243, gnl|Hg17|chr14 (88694904-88694673) | |
| 14-243, gnl|mm7|chr12 (96687661-96687442) | |
| 14-243, gnl|Mm7|chr12 (96687579-96687347) | |
| 14-243, gnl|monDom2|scaffold_8 (38063510-38063688) | |
| 14-243, gnl|oryCun1|scaffold_146169 (4772-4997) | |
| 14-243, gnl|panTro1|chr1 (111734381-111734146) | |
| 14-243, gnl|rheMac2|chr7 (152360216-152359980) | |
| 14-243, gnl|rn3|chr6 (123387574-123387359) | |
| 247-467, gnl|bosTau2|chr10 (68415802-68415578) | |
| 247-467, gnl|canFam2|chr8 (63368110-63368457) | |
| 247-467, gnl|canFam2|chr8 (63368457-63368060) | |
| 247-467, gnl|dasNov1|scaffold_8792 (30470-30138) | |
| 247-467, gnl|dasNov1|scaffold_8792 (30138-30516) | |
| 247-467, gnl|echTel1|scaffold_305909 (3695-3330) | |
| 247-467, gnl|echTel1|scaffold_305909 (3330-3740) | |
| 247-467, gnl|hg17|chr1 (110548803-110549238) | |
| 247-467, gnl|hg17|chr14 (88694374-88694761) | |
| 247-467, gnl|Hg17|chr14 (88694667-88694440) | |
| 247-467, gnl|loxAfr1|scaffold_187 (63678-64064) | |
| 247-467, gnl|loxAfr1|scaffold_187 (64064-63629) | |
| 247-467, gnl|mm7|chr12 (96687059-96687441) | |
| 247-467, gnl|mm7|chr12 (96687441-96687026) | |
| 247-467, gnl|Mm7|chr12 (96687332-96687106) | |
| 247-467, gnl|monDom2|scaffold_8 (38064096-38063696) | |
| 247-467, gnl|monDom2|scaffold_8 (38063689-38064149) | |
| 247-467, gnl|oryCun1|scaffold_146169 (4998-5408) | |
| 247-467, gnl|oryCun1|scaffold_185984 (43662-44007) | |
| 247-467, gnl|panTro1|chr1 (111734145-111733711) | |
| 247-467, gnl|panTro1|chr15 (88952291-88952677) | |
| 247-467, gnl|rheMac2|chr7 (152359589-152359979) | |
| 247-467, gnl|rheMac2|chr7 (152359979-152359538) | |
| 247-467, gnl|rn3|chr6 (123386990-123387358) | |
| 247-467, gnl|rn3|chr6 (123387358-123386957) | |
| 514-835, gnl|bosTau2|chr10 (68415560-68415245) | |
| 514-835, gnl|Hg17|chr14 (88694394-88694070) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |