Non-Coding RNA Search

Ss1.1-rpigcb_6146.5.124

Sequence:


               
               CGGCGTGTCCTTGGACCCAGAAAGCGGGACGTCCGGCCTGCGAGTGGTGGCTTGTCTGTT
GAGCTCGGCGAAAGAACGATTTTAAAATGGGTGATGTTGAGAAGGGCAAGAAGATTTTTG
TTCAGAAGTGTGCCCAGTGCCACACTGTAGAAAAGGGAGGCAAGCACAAGACTGGTCCAA
ACCTCCATGGTCTCTTTGGGCGGAAGACAGGTCAGGCTCCTGGATTCTCTTACACAGATG
CCAACAAGAACAAAGGCATCACCTGGGGAGAGGAGACACTGATGGAGTACCTGGAGAATC
CCAAGAAGTACATCCCTGGAACAAAAATGATCTTCGCTGGCATTAAGAAGAAGGGAGAAA
GGGAAGACTTGATAGCTTATCTGAAAAAAGCTACTAATGAGTAAAAGTTGGCCACCGCCT
TATTTATTACAAGACCGACGTGTCTCATGACTTTTATATGTGTACCATATTTAAATTGAT
CTCATACTCTAGAATTCAGATCATGTATGGCTGATGGAATGTTTCTGTTGGATGGTCTTG
ATTTAAATAAGATTGGTTGGTGGCTAAATGAATATGGTCAGCTGTTTGAATTTTAATATT
AATTCTAGTTCAACAAGTACTATCACTGTCTTTCCCTTCTACAGAGATGGTTAAACTTGA
ATGTGGAGTGTTAAACTTTTCAGGAAAATGGTGAATACCTTCTCAGAACCTATAGGAGAT
TGGTTTTATATTTAGATTTCTATAACTGGTTATATTAATATATTTAAATACTGAGAAGAT
CCCTTCACTGTCTCATAGAACAGAGCAAGATTCACCTGTGTTTCAAGTTGTGCTCACTAG
GCTGTTAAGGCATGAGCCAATGGTAAACTGACAATGTCCCCTTTATCTTTTTGGTCTTAA
CTATGCCAATTTCATTAGAATTACCTGTATTGAAAATACTGCCTTTTACTTATTGAAAGG
TATTTTAGCGAGGTTTATGTACAGCATCAAGTAAAGAATATTTAGCATTTCTCACATTTT
ATAGATGATCTTTAAGATCAGAGGCTTTTAAAATTCAGTGTGACGAGATATGTTAGCAAA
CTTCACAGGTGAATTCTTACAAGGTCAGGCTGTTAGAATGCAGGATTGTCTTTTAAATAG
GTAGTCAGAAACACAACTGTAGAACTACCGGATGTGTGTGATTGATAATGGTGCTTTTGC
CAACTCATGGAAGGCTTAAAGTAGGGGAGCTGTACCGTGAGCACAGATCTGTAAATTATC
TGGTCATAAAGCTTAAGAATTAAAAACAAAATCGCAGATCAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGTGTCCTTGGACCCAGAAAGCGGGACGTCCGGCCTGCGAGTGGTGGCTTGTCTGTT
GAGCTCGGCGAAAGAACGATTTTAAAATGGGTGATGTTGAGAAGGGCAAGAAGATTTTTG
TTCAGAAGTGTGCCCAGTGCCACACTGTAGAAAAGGGAGGCAAGCACAAGACTGGTCCAA
ACCTCCATGGTCTCTTTGGGCGGAAGACAGGTCAGGCTCCTGGATTCTCTTACACAGATG
CCAACAAGAACAAAGGCATCACCTGGGGAGAGGAGACACTGATGGAGTACCTGGAGAATC
CCAAGAAGTACATCCCTGGAACAAAAATGATCTTCGCTGGCATTAAGAAGAAGGGAGAAA
GGGAAGACTTGATAGCTTATCTGAAAAAAGCTACTAATGAGTAAAAGTTGGCCACCGCCT
TATTTATTACAAGACCGACGTGTCTCATGACTTTTATATGTGTACCATATTTAAATTGAT
CTCATACTCTAGAATTCAGATCATGTATGGCTGATGGAATGTTTCTGTTGGATGGTCTTG
ATTTAAATAAGATTGGTTGGTGGCTAAATGAATATGGTCAGCTGTTTGAATTTTAATATT
AATTCTAGTTCAACAAGTACTATCACTGTCTTTCCCTTCTACAGAGATGGTTAAACTTGA
ATGTGGAGTGTTAAACTTTTCAGGAAAATGGTGAATACCTTCTCAGAACCTATAGGAGAT
TGGTTTTATATTTAGATTTCTATAACTGGTTATATTAATATATTTAAATACTGAGAAGAT
CCCTTCACTGTCTCATAGAACAGAGCAAGATTCACCTGTGTTTCAAGTTGTGCTCACTAG
GCTGTTAAGGCATGAGCCAATGGTAAACTGACAATGTCCCCTTTATCTTTTTGGTCTTAA
CTATGCCAATTTCATTAGAATTACCTGTATTGAAAATACTGCCTTTTACTTATTGAAAGG
TATTTTAGCGAGGTTTATGTACAGCATCAAGTAAAGAATATTTAGCATTTCTCACATTTT
ATAGATGATCTTTAAGATCAGAGGCTTTTAAAATTCAGTGTGACGAGATATGTTAGCAAA
CTTCACAGGTGAATTCTTACAAGGTCAGGCTGTTAGAATGCAGGATTGTCTTTTAAATAG
GTAGTCAGAAACACAACTGTAGAACTACCGGATGTGTGTGATTGATAATGGTGCTTTTGC
CAACTCATGGAAGGCTTAAAGTAGGGGAGCTGTACCGTGAGCACAGATCTGTAAATTATC
TGGTCATAAAGCTTAAGAATTAAAAACAAAATCGCAGATCAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|62208258|gb|AAX77008.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62208258|gb|AAX77008.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               178-297, + strand, RNAz p=0.905643

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               178-297, + strand, RNAz p=0.905643

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               19-936, gnl|bosTau2|chr11 (79491696-79490781)
               

               
               19-936, gnl|Hg17|chr1 (147689377-147690280)
               

               
               19-936, gnl|Mm7|chr2 (90655359-90654486)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-936, gnl|bosTau2|chr11 (79491696-79490781)
               

               
               19-936, gnl|Hg17|chr1 (147689377-147690280)
               

               
               19-936, gnl|Mm7|chr2 (90655359-90654486)

Expressed library(ies): 48 entry(ies)

More info

Expressed library(ies): 48 entry(ies)

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               isp (1.80451)
               

               
               tbr (1.54178)
               

               
               nms (1.49701)
               

               
               vin (1.33023)
               

               
               bfe (1.049)
               

               
               hea (1.02249)
               

               
               duo (0.864006)
               

               
               ste (0.811249)
               

               
               cbe (0.717703)
               

               
               rec (0.692281)
               

               
               mas (0.630915)
               

               
               fco (0.628832)
               

               
               ldo (0.582016)
               

               
               cst (0.560146)
               

               
               cki (0.495704)
               

               
               jej (0.494609)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               ssp (0.406559)
               

               
               kid (0.389206)
               

               
               cmu (0.372787)
               

               
               spc (0.340097)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               thg (0.253582)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 48 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (1.80451)
               

               
               tbr (1.54178)
               

               
               nms (1.49701)
               

               
               vin (1.33023)
               

               
               bfe (1.049)
               

               
               hea (1.02249)
               

               
               duo (0.864006)
               

               
               ste (0.811249)
               

               
               cbe (0.717703)
               

               
               rec (0.692281)
               

               
               mas (0.630915)
               

               
               fco (0.628832)
               

               
               ldo (0.582016)
               

               
               cst (0.560146)
               

               
               cki (0.495704)
               

               
               jej (0.494609)
               

               
               hlv (0.417769)
               

               
               amn (0.417711)
               

               
               ssp (0.406559)
               

               
               kid (0.389206)
               

               
               cmu (0.372787)
               

               
               spc (0.340097)
               

               
               nje (0.33184)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               csk (0.281492)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               nmm (0.265604)
               

               
               thg (0.253582)
               

               
               col (0.195008)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ton (0.1755)
               

               
               sin (0.174948)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               lun (0.150489)
               

               
               liv (0.146284)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	19-936, gnl\|bosTau2\|chr11 (79491696-79490781)
	19-936, gnl\|Hg17\|chr1 (147689377-147690280)
	19-936, gnl\|Mm7\|chr2 (90655359-90654486)

	isp (1.80451)
	tbr (1.54178)
	nms (1.49701)
	vin (1.33023)
	bfe (1.049)
	hea (1.02249)
	duo (0.864006)
	ste (0.811249)
	cbe (0.717703)
	rec (0.692281)
	mas (0.630915)
	fco (0.628832)
	ldo (0.582016)
	cst (0.560146)
	cki (0.495704)
	jej (0.494609)
	hlv (0.417769)
	amn (0.417711)
	ssp (0.406559)
	kid (0.389206)
	cmu (0.372787)
	spc (0.340097)
	nje (0.33184)
	sme (0.305437)
	lin (0.291206)
	csk (0.281492)
	che (0.272628)
	fce (0.271592)
	nmm (0.265604)
	thg (0.253582)
	col (0.195008)
	sag (0.182715)
	mgm (0.180343)
	sto (0.179824)
	gul (0.177588)
	ton (0.1755)
	sin (0.174948)
	cut (0.169924)
	nco (0.161734)
	lun (0.150489)
	liv (0.146284)
	lnt (0.142308)
	nca (0.136874)
	ese (0.126502)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)
	nbm (0.0993246)