Ss1.1-rpigcb_6575.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTATGCTCAGTTGGAACGGCAGGCCTGGGACAGTCTTCAGAGACCTGAGATTAAACTTG AATCACTAAAAGAAGATATTAAGGAATTCTTTAAAATATCAGGTTGGGAGAAGAAACTTC AGAATGCTGTGTATAGTGAACTGAGTGTGTTTCCTTTACCTAGTCACCCTGCTGCACCTC CTGAACATCTTAAGGAACCCTTGGTGTACATGAGGAAAGCACAGGGAAGTTGGGAAAAAA GAATTTTGAAGAGTTTAAATAGTATGTGCACTGAACTGAGCATCCCATTGGCGCGAAAGA GGCCAGTTGGAGAACAGAAAGAACTTCTCAATAAATGGAATGAAATGGGGACTGATGAAC CAGATTTAAGCCTTTTCAGACCTGTTTACGCACCTAAGGATTTTCTTGAGGTATTAATTA ATCTTCGCAACCCAAATTATGAAAGTGGTGATTCTCTTAGTTTCAGGACTCATTTGGGTT TAATCCAAGTTCCTCTCAAAGTAAAAGACATCCCTGAGTTGAAAGAATTCTTTGTAGAAC TCGGCTTGTCTACAGGACAACTGGGTATAGATGACTCTACACAAGTGCCTCCTGAACTTT TTGAAAATGAGCATGTACGTATTGGGCAAAAAGTTCTGGCAGAACAAGACAGTGCTGCTG CTCAGCAGTATATCCGACAAGGAAGTCCCACAGCACTGAGAGCTGAATTGTGGGCGCTCA TTTTGAATATTTCCAGTCAACCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTATGCTCAGTTGGAACGGCAGGCCTGGGACAGTCTTCAGAGACCTGAGATTAAACTTG AATCACTAAAAGAAGATATTAAGGAATTCTTTAAAATATCAGGTTGGGAGAAGAAACTTC AGAATGCTGTGTATAGTGAACTGAGTGTGTTTCCTTTACCTAGTCACCCTGCTGCACCTC CTGAACATCTTAAGGAACCCTTGGTGTACATGAGGAAAGCACAGGGAAGTTGGGAAAAAA GAATTTTGAAGAGTTTAAATAGTATGTGCACTGAACTGAGCATCCCATTGGCGCGAAAGA GGCCAGTTGGAGAACAGAAAGAACTTCTCAATAAATGGAATGAAATGGGGACTGATGAAC CAGATTTAAGCCTTTTCAGACCTGTTTACGCACCTAAGGATTTTCTTGAGGTATTAATTA ATCTTCGCAACCCAAATTATGAAAGTGGTGATTCTCTTAGTTTCAGGACTCATTTGGGTT TAATCCAAGTTCCTCTCAAAGTAAAAGACATCCCTGAGTTGAAAGAATTCTTTGTAGAAC TCGGCTTGTCTACAGGACAACTGGGTATAGATGACTCTACACAAGTGCCTCCTGAACTTT TTGAAAATGAGCATGTACGTATTGGGCAAAAAGTTCTGGCAGAACAAGACAGTGCTGCTG CTCAGCAGTATATCCGACAAGGAAGTCCCACAGCACTGAGAGCTGAATTGTGGGCGCTCA TTTTGAATATTTCCAGTCAACCTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 402-521, gnl|bosTau2|chr7 (13594924-13594805) | |
| 402-521, gnl|canFam2|chr3 (86700919-86700780) | |
| 402-521, gnl|echTel1|scaffold_284653 (38336-38475) | |
| 402-521, gnl|galGal2|chr4 (73438282-73438154) | |
| 402-521, gnl|hg17|chr4 (26337480-26337618) | |
| 402-521, gnl|Hg17|chr4 (26337479-26337598) | |
| 402-521, gnl|loxAfr1|scaffold_7444 (31036-30917) | |
| 402-521, gnl|mm7|chr5 (53211426-53211564) | |
| 402-521, gnl|Mm7|chr5 (53211425-53211544) | |
| 402-521, gnl|monDom2|scaffold_10 (11465554-11465415) | |
| 402-521, gnl|oryCun1|scaffold_35012 (1092-1230) | |
| 402-521, gnl|panTro1|chr3 (26920544-26920674) | |
| 402-521, gnl|rheMac2|chr5 (21432064-21432202) | |
| 402-521, gnl|rn3|chr14 (61931581-61931443) | |
| 402-521, gnl|tetNig1|chr20 (576558-576431) | |
| 629-744, gnl|bosTau2|chr7 (13580327-13580212) | |
| 629-744, gnl|canFam2|chr3 (86686148-86686023) | |
| 629-744, gnl|danRer3|chr7 (42513490-42513616) | |
| 629-744, gnl|dasNov1|scaffold_266 (166508-166382) | |
| 629-744, gnl|echTel1|scaffold_246908 (6377-6501) | |
| 629-744, gnl|galGal2|chr4 (73432210-73432084) | |
| 629-744, gnl|hg17|chr4 (26351657-26351783) | |
| 629-744, gnl|Hg17|chr4 (26351662-26351777) | |
| 629-744, gnl|loxAfr1|scaffold_7444 (30817-30692) | |
| 629-744, gnl|mm7|chr5 (53223135-53223261) | |
| 629-744, gnl|Mm7|chr5 (53223140-53223255) | |
| 629-744, gnl|monDom2|scaffold_10 (11458752-11458617) | |
| 629-744, gnl|panTro1|chr3 (26934351-26934477) | |
| 629-744, gnl|rheMac2|chr5 (21446163-21446289) | |
| 629-744, gnl|rn3|chr14 (61927101-61926975) | |
| 629-744, gnl|tetNig1|chr20 (575312-575195) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 402-521, gnl|bosTau2|chr7 (13594924-13594805) | |
| 402-521, gnl|canFam2|chr3 (86700919-86700780) | |
| 402-521, gnl|echTel1|scaffold_284653 (38336-38475) | |
| 402-521, gnl|galGal2|chr4 (73438282-73438154) | |
| 402-521, gnl|hg17|chr4 (26337480-26337618) | |
| 402-521, gnl|Hg17|chr4 (26337479-26337598) | |
| 402-521, gnl|loxAfr1|scaffold_7444 (31036-30917) | |
| 402-521, gnl|mm7|chr5 (53211426-53211564) | |
| 402-521, gnl|Mm7|chr5 (53211425-53211544) | |
| 402-521, gnl|monDom2|scaffold_10 (11465554-11465415) | |
| 402-521, gnl|oryCun1|scaffold_35012 (1092-1230) | |
| 402-521, gnl|panTro1|chr3 (26920544-26920674) | |
| 402-521, gnl|rheMac2|chr5 (21432064-21432202) | |
| 402-521, gnl|rn3|chr14 (61931581-61931443) | |
| 402-521, gnl|tetNig1|chr20 (576558-576431) | |
| 629-744, gnl|bosTau2|chr7 (13580327-13580212) | |
| 629-744, gnl|canFam2|chr3 (86686148-86686023) | |
| 629-744, gnl|danRer3|chr7 (42513490-42513616) | |
| 629-744, gnl|dasNov1|scaffold_266 (166508-166382) | |
| 629-744, gnl|echTel1|scaffold_246908 (6377-6501) | |
| 629-744, gnl|galGal2|chr4 (73432210-73432084) | |
| 629-744, gnl|hg17|chr4 (26351657-26351783) | |
| 629-744, gnl|Hg17|chr4 (26351662-26351777) | |
| 629-744, gnl|loxAfr1|scaffold_7444 (30817-30692) | |
| 629-744, gnl|mm7|chr5 (53223135-53223261) | |
| 629-744, gnl|Mm7|chr5 (53223140-53223255) | |
| 629-744, gnl|monDom2|scaffold_10 (11458752-11458617) | |
| 629-744, gnl|panTro1|chr3 (26934351-26934477) | |
| 629-744, gnl|rheMac2|chr5 (21446163-21446289) | |
| 629-744, gnl|rn3|chr14 (61927101-61926975) | |
| 629-744, gnl|tetNig1|chr20 (575312-575195) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| spl (0.143184) | |
| sug (0.127291) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| spl (0.143184) | |
| sug (0.127291) | |
| cty (0.10408) |