Non-Coding RNA Search

Ss1.1-rpigcb_6780.5

Sequence:


               
               GCATGGTGGGGAAGTACGAGCGGTGCCTCATGGCCTTCAAGCACCCAAAGGAGGTGCTCC
ACGTGGCCCTTCTCTTCCTCCGGGTCATCAGTGCCTGTGCGGACGGCAAGATCCGCATTT
ACAGCCTCCTCAACGGGCACTGCCTGAAGGTGATGAAGGCCAATGGCAGAGGTGATCCTG
TGCTGTCCTTCTTTATTCAGGGCAACAGGATGGTGATCAACACCGAAAGCAATGTTCTCA
TGTTCCAGTTTGAGAACGTCAAGTGGCAGTACCCCCCGGAACAGGCCGGACCAAAGGACA
AAGCGGAGGACAAGGAAGAAAACAGCCTCACGGAAGTTCTCTCCAAGTCCAGCACTCAGA
TTAACAGCCCGAGGGACTCCACATCCAGCAAACAAACAGCCCGGGAGTCCCTGTTAAGCA
AACCTCACAAGTCCCGTGCCCCCCTGAGGGTATCCAGGTTACCTACAGCAGCGCTGACAG
AGGCACCTCTAAGTCAAGGGAAGCCAAAATCACCCCGAAAAGACGGCAGGAGGCAAATGG
GCTGCAGGGGAGCAGATGGCACAGCTGGTGAGCAAGAGAATTTGGAAGCAAAATCCCTCA
CTGGAGATGATGCAGAGAAAGTACCCAAACAAGGACAACTGGGAACTGGGGCAGACTTGA
TGAGTCGCCCAAAGAAAAAGTCCTGGCACATCGCCATGTCTCCTGACCAGCTCCTCCTGA
CCGTCCACGCCCTGCAGAAAGCCCATACCTCGGGGGAGTGTGCCTATCCCCGGAGGCCCC
AAGCCCAGGTCCTCGATGCCTGGGGACCTTCCATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCATGGTGGGGAAGTACGAGCGGTGCCTCATGGCCTTCAAGCACCCAAAGGAGGTGCTCC
ACGTGGCCCTTCTCTTCCTCCGGGTCATCAGTGCCTGTGCGGACGGCAAGATCCGCATTT
ACAGCCTCCTCAACGGGCACTGCCTGAAGGTGATGAAGGCCAATGGCAGAGGTGATCCTG
TGCTGTCCTTCTTTATTCAGGGCAACAGGATGGTGATCAACACCGAAAGCAATGTTCTCA
TGTTCCAGTTTGAGAACGTCAAGTGGCAGTACCCCCCGGAACAGGCCGGACCAAAGGACA
AAGCGGAGGACAAGGAAGAAAACAGCCTCACGGAAGTTCTCTCCAAGTCCAGCACTCAGA
TTAACAGCCCGAGGGACTCCACATCCAGCAAACAAACAGCCCGGGAGTCCCTGTTAAGCA
AACCTCACAAGTCCCGTGCCCCCCTGAGGGTATCCAGGTTACCTACAGCAGCGCTGACAG
AGGCACCTCTAAGTCAAGGGAAGCCAAAATCACCCCGAAAAGACGGCAGGAGGCAAATGG
GCTGCAGGGGAGCAGATGGCACAGCTGGTGAGCAAGAGAATTTGGAAGCAAAATCCCTCA
CTGGAGATGATGCAGAGAAAGTACCCAAACAAGGACAACTGGGAACTGGGGCAGACTTGA
TGAGTCGCCCAAAGAAAAAGTCCTGGCACATCGCCATGTCTCCTGACCAGCTCCTCCTGA
CCGTCCACGCCCTGCAGAAAGCCCATACCTCGGGGGAGTGTGCCTATCCCCGGAGGCCCC
AAGCCCAGGTCCTCGATGCCTGGGGACCTTCCATTT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-218, gnl|bosTau2|chr19 (23516726-23516558)
               

               
               50-218, gnl|Hg17|chr17 (15437534-15437366)
               

               
               50-218, gnl|Mm7|chr11 (62954937-62955109)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-218, gnl|bosTau2|chr19 (23516726-23516558)
               

               
               50-218, gnl|Hg17|chr17 (15437534-15437366)
               

               
               50-218, gnl|Mm7|chr11 (62954937-62955109)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cty (0.31224)
               

               
               ute (0.132784)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               ute (0.132784)

	50-218, gnl\|bosTau2\|chr19 (23516726-23516558)
	50-218, gnl\|Hg17\|chr17 (15437534-15437366)
	50-218, gnl\|Mm7\|chr11 (62954937-62955109)