Ss1.1-rpigcb_6842.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTGCTTTTGGATGGAAGTATGCTCTTTTCCCAATAGAAGATGGTAATCTTGGAGAATGA CCATGGAGAAGGGGATGAGTTCTGGAGAAGGGCTGCCTTCCAGATCATCTCAGGTTTCGG CTGTTAAAATAACAGCCAAAGAGTTGGAAACAAAACAGGCCCATAAAGAGAAGCGAGGGG GCTTTGTGTTGGTGCATGCAGGTGCAGGTTATCATTCTGAATCCAAAGCCAAGGAATATA AACATGTATGCAAACGAGCTTGTCAAAAGGCAATTGAAAAGCTACAGGCTGGCGCTCTTG CGACAGATGCAGTGACAGCAGCTCTGGTGGAGCTTGAGGTGTATACACACAGTTACACTT CATGGAGTTGCATCCAGCCAAGTGTCCATGTTCTTCTTGTGAAGAGGCAGAGAAAATCAC GAAAATCCTTGAATTTTGGAGCTGTTGGAGCACTGAGTGGAATCAAGAACCCAGTCTCAG TTGCAAACAGACTCTTGTGTGAAGGGCAGAAGGGCAAGCTCTCGGCTGGCCGAATTCCTC CCTGCTTTTTAGTTGGAGAAGGAGCCTACAGATGGGCAGTAGATCATGGAATACCCTCTT GCCCTCCTAACATCATGACCACAAGATTCAGTTTAGCTGCATTTAAAAGAAACAAGAGGA AACTAGAGCTGGCAGAAAGGGTGGAAACAGATTTCATTCAACTAAAGAAAAGAAGACAAT CAAGTGAAAAGGAGAACGACACAGGCACTTTGGATACGGTGGGCGCTGTGGTTGTGGACC ACGAAGGGAACGTGGCTGCTGCTGTCTCCAGTGGAGGCTTGGCCTTGAAACATCCAGGGA GAGTTGGGCAGGCTGCTCTTTATGGATGTGGCTGCTGGGCTGAAAATACTGGAGCTCATA ATCCCTACTCCACAGCTGTGAGTACCTCAGGATGTGGGGAGCATCTTGTGCGCACCATAC TGGCTAGAGAATGTTCACATGCTTTACAAGCCGAAGATGCTCACCAAGCTCTGTTGGAGA CTATGCAAAACAAGTTCATCAGTTCACCTTTCCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTGCTTTTGGATGGAAGTATGCTCTTTTCCCAATAGAAGATGGTAATCTTGGAGAATGA CCATGGAGAAGGGGATGAGTTCTGGAGAAGGGCTGCCTTCCAGATCATCTCAGGTTTCGG CTGTTAAAATAACAGCCAAAGAGTTGGAAACAAAACAGGCCCATAAAGAGAAGCGAGGGG GCTTTGTGTTGGTGCATGCAGGTGCAGGTTATCATTCTGAATCCAAAGCCAAGGAATATA AACATGTATGCAAACGAGCTTGTCAAAAGGCAATTGAAAAGCTACAGGCTGGCGCTCTTG CGACAGATGCAGTGACAGCAGCTCTGGTGGAGCTTGAGGTGTATACACACAGTTACACTT CATGGAGTTGCATCCAGCCAAGTGTCCATGTTCTTCTTGTGAAGAGGCAGAGAAAATCAC GAAAATCCTTGAATTTTGGAGCTGTTGGAGCACTGAGTGGAATCAAGAACCCAGTCTCAG TTGCAAACAGACTCTTGTGTGAAGGGCAGAAGGGCAAGCTCTCGGCTGGCCGAATTCCTC CCTGCTTTTTAGTTGGAGAAGGAGCCTACAGATGGGCAGTAGATCATGGAATACCCTCTT GCCCTCCTAACATCATGACCACAAGATTCAGTTTAGCTGCATTTAAAAGAAACAAGAGGA AACTAGAGCTGGCAGAAAGGGTGGAAACAGATTTCATTCAACTAAAGAAAAGAAGACAAT CAAGTGAAAAGGAGAACGACACAGGCACTTTGGATACGGTGGGCGCTGTGGTTGTGGACC ACGAAGGGAACGTGGCTGCTGCTGTCTCCAGTGGAGGCTTGGCCTTGAAACATCCAGGGA GAGTTGGGCAGGCTGCTCTTTATGGATGTGGCTGCTGGGCTGAAAATACTGGAGCTCATA ATCCCTACTCCACAGCTGTGAGTACCTCAGGATGTGGGGAGCATCTTGTGCGCACCATAC TGGCTAGAGAATGTTCACATGCTTTACAAGCCGAAGATGCTCACCAAGCTCTGTTGGAGA CTATGCAAAACAAGTTCATCAGTTCACCTTTCCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 2-203, + strand, RNAz p=0.984992 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-203, + strand, RNAz p=0.984992 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_017714, + |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 2-203, gnl|bosTau2|chr13 (2843940-2844141) | |
| 2-203, gnl|Hg17|chr20 (13558780-13558579) | |
| 2-203, gnl|Mm7|chr2 (139798333-139798138) | |
| 625-732, gnl|bosTau2|chr13 (2916493-2916600) | |
| 625-732, gnl|canFam2|chr24 (12074496-12074370) | |
| 625-732, gnl|danRer3|chr13 (35255177-35255286) | |
| 625-732, gnl|dasNov1|scaffold_3452 (117414-117540) | |
| 625-732, gnl|echTel1|scaffold_266743 (765-639) | |
| 625-732, gnl|fr1|chrUn (14932745-14932639) | |
| 625-732, gnl|hg17|chr20 (13487640-13487766) | |
| 625-732, gnl|Hg17|chr20 (13487761-13487654) | |
| 625-732, gnl|mm7|chr2 (139718445-139718571) | |
| 625-732, gnl|Mm7|chr2 (139718566-139718459) | |
| 625-732, gnl|monDom2|scaffold_1 (46982182-46982308) | |
| 625-732, gnl|oryCun1|scaffold_201748 (43862-43751) | |
| 625-732, gnl|panTro1|chr21 (13360611-13360737) | |
| 625-732, gnl|rheMac2|chr10 (46841121-46841247) | |
| 625-732, gnl|rn3|chr3 (128053724-128053850) | |
| 625-732, gnl|tetNig1|chr17 (2446807-2446930) | |
| 625-732, gnl|xenTro1|scaffold_258 (373237-373117) | |
| 929-1043, gnl|bosTau2|chr13 (2989946-2990060) | |
| 929-1043, gnl|canFam2|chr24 (12145215-12145050) | |
| 929-1043, gnl|danRer3|chr13 (35534624-35534760) | |
| 929-1043, gnl|dasNov1|scaffold_3452 (41726-41889) | |
| 929-1043, gnl|echTel1|scaffold_314076 (113483-113318) | |
| 929-1043, gnl|fr1|chrUn (14937025-14936893) | |
| 929-1043, gnl|galGal2|chr14 (19561039-19561184) | |
| 929-1043, gnl|hg17|chr20 (13411858-13412020) | |
| 929-1043, gnl|Hg17|chr20 (13411986-13411872) | |
| 929-1043, gnl|mm7|chr2 (139651370-139651531) | |
| 929-1043, gnl|Mm7|chr2 (139651498-139651384) | |
| 929-1043, gnl|monDom2|scaffold_1 (46905303-46905468) | |
| 929-1043, gnl|oryCun1|scaffold_201748 (44172-44058) | |
| 929-1043, gnl|panTro1|chr21 (13282795-13282958) | |
| 929-1043, gnl|rheMac2|chr10 (46752739-46752901) | |
| 929-1043, gnl|rn3|chr3 (127977706-127977867) | |
| 929-1043, gnl|tetNig1|chr17 (2442431-2442563) | |
| 929-1043, gnl|xenTro1|scaffold_258 (421471-421316) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-203, gnl|bosTau2|chr13 (2843940-2844141) | |
| 2-203, gnl|Hg17|chr20 (13558780-13558579) | |
| 2-203, gnl|Mm7|chr2 (139798333-139798138) | |
| 625-732, gnl|bosTau2|chr13 (2916493-2916600) | |
| 625-732, gnl|canFam2|chr24 (12074496-12074370) | |
| 625-732, gnl|danRer3|chr13 (35255177-35255286) | |
| 625-732, gnl|dasNov1|scaffold_3452 (117414-117540) | |
| 625-732, gnl|echTel1|scaffold_266743 (765-639) | |
| 625-732, gnl|fr1|chrUn (14932745-14932639) | |
| 625-732, gnl|hg17|chr20 (13487640-13487766) | |
| 625-732, gnl|Hg17|chr20 (13487761-13487654) | |
| 625-732, gnl|mm7|chr2 (139718445-139718571) | |
| 625-732, gnl|Mm7|chr2 (139718566-139718459) | |
| 625-732, gnl|monDom2|scaffold_1 (46982182-46982308) | |
| 625-732, gnl|oryCun1|scaffold_201748 (43862-43751) | |
| 625-732, gnl|panTro1|chr21 (13360611-13360737) | |
| 625-732, gnl|rheMac2|chr10 (46841121-46841247) | |
| 625-732, gnl|rn3|chr3 (128053724-128053850) | |
| 625-732, gnl|tetNig1|chr17 (2446807-2446930) | |
| 625-732, gnl|xenTro1|scaffold_258 (373237-373117) | |
| 929-1043, gnl|bosTau2|chr13 (2989946-2990060) | |
| 929-1043, gnl|canFam2|chr24 (12145215-12145050) | |
| 929-1043, gnl|danRer3|chr13 (35534624-35534760) | |
| 929-1043, gnl|dasNov1|scaffold_3452 (41726-41889) | |
| 929-1043, gnl|echTel1|scaffold_314076 (113483-113318) | |
| 929-1043, gnl|fr1|chrUn (14937025-14936893) | |
| 929-1043, gnl|galGal2|chr14 (19561039-19561184) | |
| 929-1043, gnl|hg17|chr20 (13411858-13412020) | |
| 929-1043, gnl|Hg17|chr20 (13411986-13411872) | |
| 929-1043, gnl|mm7|chr2 (139651370-139651531) | |
| 929-1043, gnl|Mm7|chr2 (139651498-139651384) | |
| 929-1043, gnl|monDom2|scaffold_1 (46905303-46905468) | |
| 929-1043, gnl|oryCun1|scaffold_201748 (44172-44058) | |
| 929-1043, gnl|panTro1|chr21 (13282795-13282958) | |
| 929-1043, gnl|rheMac2|chr10 (46752739-46752901) | |
| 929-1043, gnl|rn3|chr3 (127977706-127977867) | |
| 929-1043, gnl|tetNig1|chr17 (2442431-2442563) | |
| 929-1043, gnl|xenTro1|scaffold_258 (421471-421316) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| ill (0.175593) | |
| mcp (0.170648) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ill (0.175593) | |
| mcp (0.170648) | |
| ebs (0.118301) | |
| cty (0.10408) |