Non-Coding RNA Search

Ss1.1-rpigcb_6968.5

Sequence:


               
               AAAATCTTCCCACAGCTTCCAGAAAGCTGCAGTTCCTGGAGTACAGAAAGGACTTAGTAG
ATGACTTTAGGATACGATTAACTCAGGTGATGAAAGAAGAGACTAGAGCTTCCCTTGGCT
TTCGATATTGCGCAATTCTTAATGCTGTGAACTATATCTCAACAGTACTAGCAGACTGGG
CTGACAATGTTTTCTTTCTACAGCTTCAACAGGCAGCACTGGAAGTCTTTGCAGAGAATA
ACACTCTCAGTAAATTGCAGCTGGGACAACTAGCTTCTATGGAGAGCTCTGTCTTTGATG
ACATGATTAACCTGTTAGAGCGTTTAAAGCATGATATGTTGACCCGGCAAGTAGACCATG
TTTTTAGAGAAGTTAAAGATGCTGCAAAATTGTATAAAAAAGAAAGGTGGTTGTCCTTGC
CGTCTCAGTCAGAGCAGGCGGTGATGTCCCTGTCCAGCTCGGCTTGCCCACTGCTGCTTA
CTCTACGAGACCGTTTACTTCAGTTGGAGCAGCAGCTTTGCTTCTCCTTATTTAAAATTT
TCTGGCAGATGCTTGTAGAGAAGCTGGACATATACATCTACCAAGAAGTAAGTAAGAGCA
GACTGTAATGGGGACTGTGGTGATAAAGGTGACTGCTATATGAATTGTTCCTTTTTTCAG
ATAATTCTTGCCAATCATTTCAATGAAGGAGGAGCGGCTCAGCTGCACTTTGACATGACT
CGGAACCTTTTCCCTTTGTTTTCCCACTATTGCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATCTTCCCACAGCTTCCAGAAAGCTGCAGTTCCTGGAGTACAGAAAGGACTTAGTAG
ATGACTTTAGGATACGATTAACTCAGGTGATGAAAGAAGAGACTAGAGCTTCCCTTGGCT
TTCGATATTGCGCAATTCTTAATGCTGTGAACTATATCTCAACAGTACTAGCAGACTGGG
CTGACAATGTTTTCTTTCTACAGCTTCAACAGGCAGCACTGGAAGTCTTTGCAGAGAATA
ACACTCTCAGTAAATTGCAGCTGGGACAACTAGCTTCTATGGAGAGCTCTGTCTTTGATG
ACATGATTAACCTGTTAGAGCGTTTAAAGCATGATATGTTGACCCGGCAAGTAGACCATG
TTTTTAGAGAAGTTAAAGATGCTGCAAAATTGTATAAAAAAGAAAGGTGGTTGTCCTTGC
CGTCTCAGTCAGAGCAGGCGGTGATGTCCCTGTCCAGCTCGGCTTGCCCACTGCTGCTTA
CTCTACGAGACCGTTTACTTCAGTTGGAGCAGCAGCTTTGCTTCTCCTTATTTAAAATTT
TCTGGCAGATGCTTGTAGAGAAGCTGGACATATACATCTACCAAGAAGTAAGTAAGAGCA
GACTGTAATGGGGACTGTGGTGATAAAGGTGACTGCTATATGAATTGTTCCTTTTTTCAG
ATAATTCTTGCCAATCATTTCAATGAAGGAGGAGCGGCTCAGCTGCACTTTGACATGACT
CGGAACCTTTTCCCTTTGTTTTCCCACTATTGCAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47179819|emb|CAG13551.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47179819|emb|CAG13551.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               479-598, - strand, RNAz p=0.658831

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               479-598, - strand, RNAz p=0.658831

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-191, gnl|bosTau2|chr4 (22699743-22699553)
               

               
               1-191, gnl|Hg17|chr7 (104789435-104789625)
               

               
               1-191, gnl|Mm7|chr5 (22852212-22852402)
               


               
               405-756, gnl|bosTau2|chr4 (22694662-22694311)
               

               
               405-756, gnl|Hg17|chr7 (104799673-104800023)
               

               
               405-756, gnl|Mm7|chr12 (31247864-31247513)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-191, gnl|bosTau2|chr4 (22699743-22699553)
               

               
               1-191, gnl|Hg17|chr7 (104789435-104789625)
               

               
               1-191, gnl|Mm7|chr5 (22852212-22852402)
               


               
               405-756, gnl|bosTau2|chr4 (22694662-22694311)
               

               
               405-756, gnl|Hg17|chr7 (104799673-104800023)
               

               
               405-756, gnl|Mm7|chr12 (31247864-31247513)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               liv (0.146284)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.146284)
               

               
               cty (0.10408)

	1-191, gnl\|bosTau2\|chr4 (22699743-22699553)
	1-191, gnl\|Hg17\|chr7 (104789435-104789625)
	1-191, gnl\|Mm7\|chr5 (22852212-22852402)

	405-756, gnl\|bosTau2\|chr4 (22694662-22694311)
	405-756, gnl\|Hg17\|chr7 (104799673-104800023)
	405-756, gnl\|Mm7\|chr12 (31247864-31247513)