Non-Coding RNA Search

Ss1.1-rpigcb_7275.5

Sequence:


               
               GTGAAATTTAAAACTGCTAACTTGGTGTGTTGGACAGTGATGTCTTATGAGATGATCTCA
GCACCCTATGTGAGCAGAATAAATTGTTTTCTTCTAGAGAGTTTCCCTTTTAGAAATCCT
GTATTAACTACTGTGGAGAGGAGCTATCTTTGACAAGACATTAATTTCAAAATCACTTGT
TAATTCACCGCAGCATTTATTGTGACATCATCACAAAGAACAGCCTGACTTCCCTAAACA
GGCTTTTTGTAGAATGAGAACCTTAAAAATGAACAC------------------------
------------------------------------------------------------
------------------------------------------------TGAACACTGTAG
ATGGCAAGAGTCTTGAAATTAGGATATTAATCTCTAAGTTGCTAATAATAAACTTGTATA
GTGAAATATGCATTGGTTTTTAAGATGTTAATTTCATAATCAGAAAAAAATGTTAAATAG
GGATCATTCGGAAGTAAATATTTGAACAAGAACAGAATCTCTTTGTTTGAAATGCCTACG
TGTGCCCAGGGATCATGGAATAAGAATACCTGTTGTTAGGTGTCAGTACAAAACTGTAAG
AAGCACTGTGCCAGGATAATGATAGACTAATTTTCACTTGGAAAAGTACCAGAAAGTCAT
AGATTTAACAGTATACAAGATCCTGTCATTTTTCCAAATTGTTTACTACTGTTGTTAAAA
TACATAAGAACCAAATATAGTAGTCAGAATTTGAGAGAGATCTCCTTTTGGTGCATCCAG
AAAAAAATCTGGGCAAGTTTTTGTGCTGTGTATTGTAAAGGACAGCATTTTTTCCACAAG
AATTTACACTTAAAATAGAAATGAAAGATTATACAAATGACTTTTTTCAACAATTTGTAC
ACAACTTTTCTAAAATTTTTATTTTGCATAAAACAAAATTTAACTGTAGCCAAATATTAA
AAATATGAGTCTAGACAGAAATTCAAATTTCCTGATTTTAGCTGTTGTTTCCCTCTAGAT
AACCATCTTCGAACTTTATAGCAGTAAGTCGGAAATACTTGGAAGGGAAAAAGTCCTCTT
GGTTTATTATTACATGACGCCTTGAAACATGCCTGTTTTTATGGTCTTATTTTCCTTTCT
CTGTATTTCTTTTCCATTTACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAATTTAAAACTGCTAACTTGGTGTGTTGGACAGTGATGTCTTATGAGATGATCTCA
GCACCCTATGTGAGCAGAATAAATTGTTTTCTTCTAGAGAGTTTCCCTTTTAGAAATCCT
GTATTAACTACTGTGGAGAGGAGCTATCTTTGACAAGACATTAATTTCAAAATCACTTGT
TAATTCACCGCAGCATTTATTGTGACATCATCACAAAGAACAGCCTGACTTCCCTAAACA
GGCTTTTTGTAGAATGAGAACCTTAAAAATGAACAC------------------------
------------------------------------------------------------
------------------------------------------------TGAACACTGTAG
ATGGCAAGAGTCTTGAAATTAGGATATTAATCTCTAAGTTGCTAATAATAAACTTGTATA
GTGAAATATGCATTGGTTTTTAAGATGTTAATTTCATAATCAGAAAAAAATGTTAAATAG
GGATCATTCGGAAGTAAATATTTGAACAAGAACAGAATCTCTTTGTTTGAAATGCCTACG
TGTGCCCAGGGATCATGGAATAAGAATACCTGTTGTTAGGTGTCAGTACAAAACTGTAAG
AAGCACTGTGCCAGGATAATGATAGACTAATTTTCACTTGGAAAAGTACCAGAAAGTCAT
AGATTTAACAGTATACAAGATCCTGTCATTTTTCCAAATTGTTTACTACTGTTGTTAAAA
TACATAAGAACCAAATATAGTAGTCAGAATTTGAGAGAGATCTCCTTTTGGTGCATCCAG
AAAAAAATCTGGGCAAGTTTTTGTGCTGTGTATTGTAAAGGACAGCATTTTTTCCACAAG
AATTTACACTTAAAATAGAAATGAAAGATTATACAAATGACTTTTTTCAACAATTTGTAC
ACAACTTTTCTAAAATTTTTATTTTGCATAAAACAAAATTTAACTGTAGCCAAATATTAA
AAATATGAGTCTAGACAGAAATTCAAATTTCCTGATTTTAGCTGTTGTTTCCCTCTAGAT
AACCATCTTCGAACTTTATAGCAGTAAGTCGGAAATACTTGGAAGGGAAAAAGTCCTCTT
GGTTTATTATTACATGACGCCTTGAAACATGCCTGTTTTTATGGTCTTATTTTCCTTTCT
CTGTATTTCTTTTCCATTTACATG

Aligned organism(s): 4 entry(ies)

More info

Aligned organism(s): 4 entry(ies)

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               1-488, gnl|bosTau2|chr9 (36078552-36079013)
               

               
               1-488, gnl|Hg17|chr1 (86903437-86903915)
               


               
               732-1092, gnl|bosTau2|chr9 (36079093-36079463)
               

               
               732-1092, gnl|Hg17|chr1 (86904170-86904545)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-488, gnl|bosTau2|chr9 (36078552-36079013)
               

               
               1-488, gnl|Hg17|chr1 (86903437-86903915)
               


               
               732-1092, gnl|bosTau2|chr9 (36079093-36079463)
               

               
               732-1092, gnl|Hg17|chr1 (86904170-86904545)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-488, gnl\|bosTau2\|chr9 (36078552-36079013)
	1-488, gnl\|Hg17\|chr1 (86903437-86903915)

	732-1092, gnl\|bosTau2\|chr9 (36079093-36079463)
	732-1092, gnl\|Hg17\|chr1 (86904170-86904545)