Non-Coding RNA Search

Ss1.1-rpigcb_7511.5

Sequence:


               
               TGCTGCCTAAGTTCTATGGACTCTACTGTGTGCAGGCAGGTGGTAAGAACATTCGAATTG
TTGTGATGAACAATCTCTTACCACGGTCAGTCAAGATGCATATCAAATATGACCTCAAGG
GCTCAACCTACAAAAGGCGGGCTTCTCAGAAAGAGCGAGAGAAGCCTCTCCCCACCCTTA
AAGACCTGGACTTCTTACAAGACATCCCTGATGGTCTCTTTTTGGATGCTGATATGTACA
GTGCTCTATGCAAGACCCTGCAGCGTGACTGTTTGGTGCTGCAGAGCTTCAAGATAATGG
ATTATAGCCTTCTGGTATCAATCCATAACATAGATCACGCACAGAGAGAGCCTTTAAGCA
ATGAAGCACAGTATCCAGCCGACACTCGTAGACCAGCCCCCCAAAAGGCTCTCTATTCCA
CAGCCATGGAATCTATCCAGGGCGAGGCTCGACGAGGTGGTACTGTGGAGACAGATGACC
TTATGGGTGGTATACCAGCTCGGAATAGTAAAGGGGAAAGGCTGCTGCTTTATATTGGAA
TCATAGACATTCTACAGTCTTACAGGTTTGTTAAGAAATTGGAGCACTCTTGGAAAGCTC
TGGTACATGATGGGGACACCGTATCGGTGCATCGCCCAGGCTTCTATGCTGAACGGTTCC
AGCGCTTCATGTGCAATACAGTGTTCAAGAAGATCCCCTTGAAGCCTTCTCCTTCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCTGCCTAAGTTCTATGGACTCTACTGTGTGCAGGCAGGTGGTAAGAACATTCGAATTG
TTGTGATGAACAATCTCTTACCACGGTCAGTCAAGATGCATATCAAATATGACCTCAAGG
GCTCAACCTACAAAAGGCGGGCTTCTCAGAAAGAGCGAGAGAAGCCTCTCCCCACCCTTA
AAGACCTGGACTTCTTACAAGACATCCCTGATGGTCTCTTTTTGGATGCTGATATGTACA
GTGCTCTATGCAAGACCCTGCAGCGTGACTGTTTGGTGCTGCAGAGCTTCAAGATAATGG
ATTATAGCCTTCTGGTATCAATCCATAACATAGATCACGCACAGAGAGAGCCTTTAAGCA
ATGAAGCACAGTATCCAGCCGACACTCGTAGACCAGCCCCCCAAAAGGCTCTCTATTCCA
CAGCCATGGAATCTATCCAGGGCGAGGCTCGACGAGGTGGTACTGTGGAGACAGATGACC
TTATGGGTGGTATACCAGCTCGGAATAGTAAAGGGGAAAGGCTGCTGCTTTATATTGGAA
TCATAGACATTCTACAGTCTTACAGGTTTGTTAAGAAATTGGAGCACTCTTGGAAAGCTC
TGGTACATGATGGGGACACCGTATCGGTGCATCGCCCAGGCTTCTATGCTGAACGGTTCC
AGCGCTTCATGTGCAATACAGTGTTCAAGAAGATCCCCTTGAAGCCTTCTCCTTCCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|50782513|ref|XP_427539.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|50782513|ref|XP_427539.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-119, + strand, RNAz p=0.509745
               

               
               1-119, + strand, RNAz p=0.928892

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-119, + strand, RNAz p=0.509745
               

               
               1-119, + strand, RNAz p=0.928892

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-277, gnl|bosTau2|chr3 (16332138-16331862)
               

               
               1-277, gnl|canFam2|chr17 (63362225-63362009)
               

               
               1-277, gnl|danRer3|chrUn (118726283-118726066)
               

               
               1-277, gnl|dasNov1|scaffold_6908 (98993-98777)
               

               
               1-277, gnl|fr1|chrUn (156440721-156440504)
               

               
               1-277, gnl|galGal2|chrUn (96982306-96982090)
               

               
               1-277, gnl|Hg17|chr1 (148019771-148020047)
               

               
               1-277, gnl|hg17|chr10 (95710362-95710579)
               

               
               1-277, gnl|mm7|chr3 (94944660-94944876)
               

               
               1-277, gnl|Mm7|chr3 (94944935-94944659)
               

               
               1-277, gnl|monDom2|scaffold_44 (4426603-4426387)
               

               
               1-277, gnl|oryCun1|scaffold_203128 (50394-50610)
               

               
               1-277, gnl|panTro1|chr8 (97467675-97467892)
               

               
               1-277, gnl|rheMac2|chr1 (129662973-129662757)
               

               
               1-277, gnl|rn3|chr2 (189936068-189936284)
               

               
               1-277, gnl|tetNig1|chr21_random (2434276-2434493)
               

               
               1-277, gnl|xenTro1|scaffold_1426 (9926-10142)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-277, gnl|bosTau2|chr3 (16332138-16331862)
               

               
               1-277, gnl|canFam2|chr17 (63362225-63362009)
               

               
               1-277, gnl|danRer3|chrUn (118726283-118726066)
               

               
               1-277, gnl|dasNov1|scaffold_6908 (98993-98777)
               

               
               1-277, gnl|fr1|chrUn (156440721-156440504)
               

               
               1-277, gnl|galGal2|chrUn (96982306-96982090)
               

               
               1-277, gnl|Hg17|chr1 (148019771-148020047)
               

               
               1-277, gnl|hg17|chr10 (95710362-95710579)
               

               
               1-277, gnl|mm7|chr3 (94944660-94944876)
               

               
               1-277, gnl|Mm7|chr3 (94944935-94944659)
               

               
               1-277, gnl|monDom2|scaffold_44 (4426603-4426387)
               

               
               1-277, gnl|oryCun1|scaffold_203128 (50394-50610)
               

               
               1-277, gnl|panTro1|chr8 (97467675-97467892)
               

               
               1-277, gnl|rheMac2|chr1 (129662973-129662757)
               

               
               1-277, gnl|rn3|chr2 (189936068-189936284)
               

               
               1-277, gnl|tetNig1|chr21_random (2434276-2434493)
               

               
               1-277, gnl|xenTro1|scaffold_1426 (9926-10142)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-119, + strand, RNAz p=0.509745
	1-119, + strand, RNAz p=0.928892

	1-277, gnl\|bosTau2\|chr3 (16332138-16331862)
	1-277, gnl\|canFam2\|chr17 (63362225-63362009)
	1-277, gnl\|danRer3\|chrUn (118726283-118726066)
	1-277, gnl\|dasNov1\|scaffold_6908 (98993-98777)
	1-277, gnl\|fr1\|chrUn (156440721-156440504)
	1-277, gnl\|galGal2\|chrUn (96982306-96982090)
	1-277, gnl\|Hg17\|chr1 (148019771-148020047)
	1-277, gnl\|hg17\|chr10 (95710362-95710579)
	1-277, gnl\|mm7\|chr3 (94944660-94944876)
	1-277, gnl\|Mm7\|chr3 (94944935-94944659)
	1-277, gnl\|monDom2\|scaffold_44 (4426603-4426387)
	1-277, gnl\|oryCun1\|scaffold_203128 (50394-50610)
	1-277, gnl\|panTro1\|chr8 (97467675-97467892)
	1-277, gnl\|rheMac2\|chr1 (129662973-129662757)
	1-277, gnl\|rn3\|chr2 (189936068-189936284)
	1-277, gnl\|tetNig1\|chr21_random (2434276-2434493)
	1-277, gnl\|xenTro1\|scaffold_1426 (9926-10142)