Non-Coding RNA Search

Ss1.1-rpigcb_7563.5

Sequence:


               
               GCAGCCCAAACTCAGGCAGAAGAAGACAGACAGGCCAACAGGTTCAGACACAACTCCACT
CGCTCCACGCCCCCCACTGCTCTCGGTCCTGATGGAGCTGAGGCATACCCCTGCTAGGGA
CCTAGACAAGTTCATCGAAGACCACCTCCTGCCAAACACATGTTTCCGAACGCAGGTCAA
GGAAGCCATCGACATCGTCTGCAGTTTCCTGAAGGAGAGGTGCTTCCAGGGGACCGCCCA
CCCTGTTCGCGTCTCCAAAGTTGTGAAGGGTGGCTCCTCGGGCAAAGGCACGACCCTCAG
GGGCCGATCAGATGCTGACCTCGTCGTCTTCCTCACCAAGCTCACAAGTTTTGAGGATCA
GCTTCGGCGCCGAGGAGAATTCATCCAGGAAATTCGGAGACAGCTGGAAGCCTGTCAAAG
AGAACAAAAGTTTAAAGTGACGTTTGAGGTCCAGAGTCCACGACGGGAGAACCCCCGTGC
CCTCAGCTTCGTGCTCAGCTCCCCCCAGCTCCAGCAGGAGGTGGAGTTTGATGTCCTGCC
CGCCTTTGATGCCCTGGGTCAGTGGACCCCGGGCTACAAACCCAACCCGGAAATCTACGT
CCAGCTTATCCAAGAGTGCAAGTCCCGAGGGAAAGAGGGCGAGTTTTCCACCTGCTTCAC
GGAGCTGCAGCGAGACTTCCTGAGGAACCGACCTACCAAGCTGAAGAGCCTCATCCGCCT
TGTCAAGCACTGGTACCAGACGTGTAAGAAGACTCATGGAAATAAACTGCCCCCACAGTA
TGCCCTGGAGCTCCTGACAGTCTATGCATGGGAGCAAGGAAGCAGGAAAACAGATTTTAG
CACAGCTCAGGGATTTCAGACTGTTTTGGAATTAGTCCTAAAGCATCAGAAGCTTTGCAT
CTTCTGGGAAGCATATTATGACTTTACAAACCCTGTCGTTGGACGATGTATGCTCCAGCA
ACTCAAGAAACCCAGGCCTGTGATTCTGGACCCGGCTGACCCTACAGGCAACGTTGGTGG
TGGAGACACACACAGCTGGCAGCGGCTGGCACAAGAGGCTAGAGTCTGGCTGGGGTACCC
ATGCTGCAAGAATCTGGATGGGTCTCTGGTTGGCGCCTGGACCATGCTGCAGAAAATCTG
ATTCCTTCATGTAACCTGATATTGATTGCGTGTTGAAATAACAATTCTAGAAATAGTGTA
CTAACTCAAATTGAATTTCATCTTTGTCTTTTTACTCTTTTCATGTGGTTGCTAGAAATT
TTAAGTTATACATGTGGTTTGCAGTATATTTCTGTTGGAAGGTTCTGCCCTAGAAGGAAT
CACTGGGTCAGATAGTAGGCTTACCAACTATCATTGTGAGACTGTCACACAGTCTTGGCA
CCAAAAGCAACATTTCACTTACAATAGTCCATTATATAAAAACCCATGTGTGTACATAAG
ATCAAGCACAAAAGATCAAGCGTGTTCTTAGCCACCTGAGTCACTGGTCACCTAAGTGGC
TGGAAAGCAGCCTTTGGCGTTTCCATGTTACCCTTCCTCCTTTGAATCATACAGCATTCT
TGTGAGATGGGTTTTTTTTTTCCTTATTCTCATTATAATAAATTGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCCCAAACTCAGGCAGAAGAAGACAGACAGGCCAACAGGTTCAGACACAACTCCACT
CGCTCCACGCCCCCCACTGCTCTCGGTCCTGATGGAGCTGAGGCATACCCCTGCTAGGGA
CCTAGACAAGTTCATCGAAGACCACCTCCTGCCAAACACATGTTTCCGAACGCAGGTCAA
GGAAGCCATCGACATCGTCTGCAGTTTCCTGAAGGAGAGGTGCTTCCAGGGGACCGCCCA
CCCTGTTCGCGTCTCCAAAGTTGTGAAGGGTGGCTCCTCGGGCAAAGGCACGACCCTCAG
GGGCCGATCAGATGCTGACCTCGTCGTCTTCCTCACCAAGCTCACAAGTTTTGAGGATCA
GCTTCGGCGCCGAGGAGAATTCATCCAGGAAATTCGGAGACAGCTGGAAGCCTGTCAAAG
AGAACAAAAGTTTAAAGTGACGTTTGAGGTCCAGAGTCCACGACGGGAGAACCCCCGTGC
CCTCAGCTTCGTGCTCAGCTCCCCCCAGCTCCAGCAGGAGGTGGAGTTTGATGTCCTGCC
CGCCTTTGATGCCCTGGGTCAGTGGACCCCGGGCTACAAACCCAACCCGGAAATCTACGT
CCAGCTTATCCAAGAGTGCAAGTCCCGAGGGAAAGAGGGCGAGTTTTCCACCTGCTTCAC
GGAGCTGCAGCGAGACTTCCTGAGGAACCGACCTACCAAGCTGAAGAGCCTCATCCGCCT
TGTCAAGCACTGGTACCAGACGTGTAAGAAGACTCATGGAAATAAACTGCCCCCACAGTA
TGCCCTGGAGCTCCTGACAGTCTATGCATGGGAGCAAGGAAGCAGGAAAACAGATTTTAG
CACAGCTCAGGGATTTCAGACTGTTTTGGAATTAGTCCTAAAGCATCAGAAGCTTTGCAT
CTTCTGGGAAGCATATTATGACTTTACAAACCCTGTCGTTGGACGATGTATGCTCCAGCA
ACTCAAGAAACCCAGGCCTGTGATTCTGGACCCGGCTGACCCTACAGGCAACGTTGGTGG
TGGAGACACACACAGCTGGCAGCGGCTGGCACAAGAGGCTAGAGTCTGGCTGGGGTACCC
ATGCTGCAAGAATCTGGATGGGTCTCTGGTTGGCGCCTGGACCATGCTGCAGAAAATCTG
ATTCCTTCATGTAACCTGATATTGATTGCGTGTTGAAATAACAATTCTAGAAATAGTGTA
CTAACTCAAATTGAATTTCATCTTTGTCTTTTTACTCTTTTCATGTGGTTGCTAGAAATT
TTAAGTTATACATGTGGTTTGCAGTATATTTCTGTTGGAAGGTTCTGCCCTAGAAGGAAT
CACTGGGTCAGATAGTAGGCTTACCAACTATCATTGTGAGACTGTCACACAGTCTTGGCA
CCAAAAGCAACATTTCACTTACAATAGTCCATTATATAAAAACCCATGTGTGTACATAAG
ATCAAGCACAAAAGATCAAGCGTGTTCTTAGCCACCTGAGTCACTGGTCACCTAAGTGGC
TGGAAAGCAGCCTTTGGCGTTTCCATGTTACCCTTCCTCCTTTGAATCATACAGCATTCT
TGTGAGATGGGTTTTTTTTTTCCTTATTCTCATTATAATAAATTGAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               OAS1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               OAS1_PIG

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               267-563, gnl|bosTau2|chr17 (37659338-37659634)
               

               
               267-563, gnl|Hg17|chr12 (111809059-111809355)
               

               
               267-563, gnl|Mm7|chr5 (120120049-120119754)
               


               
               742-976, gnl|bosTau2|chr17 (37663967-37664201)
               

               
               742-976, gnl|Hg17|chr12 (111817033-111817264)
               

               
               742-976, gnl|Mm7|chr5 (120113319-120113085)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               267-563, gnl|bosTau2|chr17 (37659338-37659634)
               

               
               267-563, gnl|Hg17|chr12 (111809059-111809355)
               

               
               267-563, gnl|Mm7|chr5 (120120049-120119754)
               


               
               742-976, gnl|bosTau2|chr17 (37663967-37664201)
               

               
               742-976, gnl|Hg17|chr12 (111817033-111817264)
               

               
               742-976, gnl|Mm7|chr5 (120113319-120113085)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               nje (1.6592)
               

               
               duo (0.691204)
               

               
               cty (0.62448)
               

               
               cst (0.560146)
               

               
               cje (0.495704)
               

               
               cag (0.453583)
               

               
               cbl (0.344392)
               

               
               clu (0.239292)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               med (0.116252)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (1.6592)
               

               
               duo (0.691204)
               

               
               cty (0.62448)
               

               
               cst (0.560146)
               

               
               cje (0.495704)
               

               
               cag (0.453583)
               

               
               cbl (0.344392)
               

               
               clu (0.239292)
               

               
               jej (0.197844)
               

               
               col (0.195008)
               

               
               sin (0.174948)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               med (0.116252)

	267-563, gnl\|bosTau2\|chr17 (37659338-37659634)
	267-563, gnl\|Hg17\|chr12 (111809059-111809355)
	267-563, gnl\|Mm7\|chr5 (120120049-120119754)

	742-976, gnl\|bosTau2\|chr17 (37663967-37664201)
	742-976, gnl\|Hg17\|chr12 (111817033-111817264)
	742-976, gnl\|Mm7\|chr5 (120113319-120113085)

	nje (1.6592)
	duo (0.691204)
	cty (0.62448)
	cst (0.560146)
	cje (0.495704)
	cag (0.453583)
	cbl (0.344392)
	clu (0.239292)
	jej (0.197844)
	col (0.195008)
	sin (0.174948)
	nco (0.161734)
	tbr (0.154178)
	hyp (0.142837)
	pla (0.133672)
	med (0.116252)