Non-Coding RNA Search

Ss1.1-rpigcb_7572.5

Sequence:


               
               GAGGCAGCTCCAAGTCACAAGCTGGTGGTAGTGGTGCGAAGTCTGGCAGAGCTAGTGGGA
CCAGGCCCAGGCCCTGGAGCCACAGCCACTGTGACCGTGTTGGTGGAAAGGGTGCTGCCA
CCTCTTAAGTTGGACCAGGAGAACTATGAGGTCAGTGTGCCAGTCAGTGCGCCAGCTGGC
TCCCTCCTGCTGACCATCCAGCCCGCCGCTGACCCCATGAGCAGCCCCCTCAGGTTCTCC
CTGGTCAATGACTCGGAGGGTTGGCTCGACATCAAGGAGGCCTCCGGGGAAGTGCACACA
GCCCGGCCCCTGCAGGGCGCCCAGCCTGGGGACATGTACACGGTGCTCGTGGCGGCCCAG
GTTGCAGATGAGCCAACACTGAGCACCTCTGCGACCCTCATGATCCACTTCCTGAAGGCC
CCTTCTGCCCCAACCCCGACTCTGGCCCCTCTGGCTCCTGTGCCCACCCGACACCTCTGC
ACACCCCGCCAGGACCATGGCGTGGTTGTCAGCGGACTCAGAGAGGACCCTGACCTGGCC
GGTGGGCATGGTCCCTACAGCTTTGCCCTTGGTCCCAACCCCACGGTGCAGCGGGACTGG
CGCCTCCGGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCAGCTCCAAGTCACAAGCTGGTGGTAGTGGTGCGAAGTCTGGCAGAGCTAGTGGGA
CCAGGCCCAGGCCCTGGAGCCACAGCCACTGTGACCGTGTTGGTGGAAAGGGTGCTGCCA
CCTCTTAAGTTGGACCAGGAGAACTATGAGGTCAGTGTGCCAGTCAGTGCGCCAGCTGGC
TCCCTCCTGCTGACCATCCAGCCCGCCGCTGACCCCATGAGCAGCCCCCTCAGGTTCTCC
CTGGTCAATGACTCGGAGGGTTGGCTCGACATCAAGGAGGCCTCCGGGGAAGTGCACACA
GCCCGGCCCCTGCAGGGCGCCCAGCCTGGGGACATGTACACGGTGCTCGTGGCGGCCCAG
GTTGCAGATGAGCCAACACTGAGCACCTCTGCGACCCTCATGATCCACTTCCTGAAGGCC
CCTTCTGCCCCAACCCCGACTCTGGCCCCTCTGGCTCCTGTGCCCACCCGACACCTCTGC
ACACCCCGCCAGGACCATGGCGTGGTTGTCAGCGGACTCAGAGAGGACCCTGACCTGGCC
GGTGGGCATGGTCCCTACAGCTTTGCCCTTGGTCCCAACCCCACGGTGCAGCGGGACTGG
CGCCTCCGGGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-120, + strand, RNAz p=0.962188
               

               
               483-602, - strand, RNAz p=0.777708

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, + strand, RNAz p=0.962188
               

               
               483-602, - strand, RNAz p=0.777708

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-235, gnl|bosTau2|chr18 (28165102-28164871)
               

               
               1-235, gnl|Hg17|chr16 (65503532-65503301)
               

               
               1-235, gnl|Mm7|chr8 (103217157-103216926)
               


               
               363-612, gnl|bosTau2|chr18 (28163374-28163134)
               

               
               363-612, gnl|canFam2|chr5 (85413946-85413662)
               

               
               363-612, gnl|hg17|chr16 (65501602-65501885)
               

               
               363-612, gnl|Hg17|chr16 (65501911-65501671)
               

               
               363-612, gnl|loxAfr1|scaffold_21585 (18512-18233)
               

               
               363-612, gnl|mm7|chr8 (103215511-103215789)
               

               
               363-612, gnl|Mm7|chr8 (103215815-103215575)
               

               
               363-612, gnl|monDom2|scaffold_23 (20530492-20530195)
               

               
               363-612, gnl|panTro1|chr18 (59740132-59740415)
               

               
               363-612, gnl|rheMac2|chr20 (65200914-65201197)
               

               
               363-612, gnl|rn3|chr19 (287386-287113)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-235, gnl|bosTau2|chr18 (28165102-28164871)
               

               
               1-235, gnl|Hg17|chr16 (65503532-65503301)
               

               
               1-235, gnl|Mm7|chr8 (103217157-103216926)
               


               
               363-612, gnl|bosTau2|chr18 (28163374-28163134)
               

               
               363-612, gnl|canFam2|chr5 (85413946-85413662)
               

               
               363-612, gnl|hg17|chr16 (65501602-65501885)
               

               
               363-612, gnl|Hg17|chr16 (65501911-65501671)
               

               
               363-612, gnl|loxAfr1|scaffold_21585 (18512-18233)
               

               
               363-612, gnl|mm7|chr8 (103215511-103215789)
               

               
               363-612, gnl|Mm7|chr8 (103215815-103215575)
               

               
               363-612, gnl|monDom2|scaffold_23 (20530492-20530195)
               

               
               363-612, gnl|panTro1|chr18 (59740132-59740415)
               

               
               363-612, gnl|rheMac2|chr20 (65200914-65201197)
               

               
               363-612, gnl|rn3|chr19 (287386-287113)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               clu (0.119646)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fli (0.202881)
               

               
               clu (0.119646)

	1-120, + strand, RNAz p=0.962188
	483-602, - strand, RNAz p=0.777708

	1-235, gnl\|bosTau2\|chr18 (28165102-28164871)
	1-235, gnl\|Hg17\|chr16 (65503532-65503301)
	1-235, gnl\|Mm7\|chr8 (103217157-103216926)

	363-612, gnl\|bosTau2\|chr18 (28163374-28163134)
	363-612, gnl\|canFam2\|chr5 (85413946-85413662)
	363-612, gnl\|hg17\|chr16 (65501602-65501885)
	363-612, gnl\|Hg17\|chr16 (65501911-65501671)
	363-612, gnl\|loxAfr1\|scaffold_21585 (18512-18233)
	363-612, gnl\|mm7\|chr8 (103215511-103215789)
	363-612, gnl\|Mm7\|chr8 (103215815-103215575)
	363-612, gnl\|monDom2\|scaffold_23 (20530492-20530195)
	363-612, gnl\|panTro1\|chr18 (59740132-59740415)
	363-612, gnl\|rheMac2\|chr20 (65200914-65201197)
	363-612, gnl\|rn3\|chr19 (287386-287113)