Non-Coding RNA Search

Ss1.1-rpigcb_7573.5

Sequence:


               
               CGTCTCCCCTGTAGACTCTGTCCTGCTGGTCCCTCTAGGAGCCACGGGGGCGTCCCCAGC
TGAGGGTCCTCCCAGCAGCTGGGAGGGTGGAGGGGGCAGGCCCCAAAGGCAGAGTCGGGG
CTGGGCATTGGGAACCAGCCCCAGTGGGGGATCAGATGTGGAACCAAAAACAGAAGAAAA
AACTGTGAGAGATTTTGTCTGCCTCTGCCCTGCCTGGGAGTCCACAGGGAGACGATAATC
TCTGTATTTTTTTACTCCCGCTCCCCAGAGGGGCCCCAGAGCCCCCGTTCCTGAATTACA
CAAGAATGTATCATGCCGGGAAGCCAGAGACCTGCTGGGGCCCTGGGCCCCTCACAGTGT
GTGTGTGTGTGTCTCTCCTTGATTTGTGTTTGTGTCCAGTTTGGTTTTGTCTTTTTTATT
TGGCAAGTGGAGGAGGCCTTTGTGTGACTTTTATGTCGTGGTTGGTGTCTTAACTCTCCT
GGGGGAGAGGAGGCTGGCACATACGGGTGCCCCAGCCTGGCTGGATGTGGAATGGTTGGG
GAGGAGCCCTCCAGCGGCTGATGCCCGTGAGGGACAAAGAGGCCGACCAAGGAGGGAGGT
GCCTGTCAGCCAGAGTCTACAGGAGGGTCTGGTCCTGTCCTTCCTCACCCTGAGAGTGAA
GTGCCACCCCCTCCCCAACACGTGTATCTCAACTCCTGGATTCCGTAAGTCCTGCTGGTA
TTGGGCTGGAGCCTGGGAAAGTGGCCCCATCCGTCTCAGTGACCTAAAGCGGGGTATGAA
ATGTAGGCCGAAAAACATGTTCTTTAATTTTAAATTTAGACCCAGGTTCATTAGCAGAGT
CCGTCCCGACTTCCCTTCTCCCTCCTCATTGGTGTTTTCCTGCACCTGCCCCCCAGGACC
TGAAGTGGCCCGAAAGGGGAAGCTGAGCACTGTGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCTCCCCTGTAGACTCTGTCCTGCTGGTCCCTCTAGGAGCCACGGGGGCGTCCCCAGC
TGAGGGTCCTCCCAGCAGCTGGGAGGGTGGAGGGGGCAGGCCCCAAAGGCAGAGTCGGGG
CTGGGCATTGGGAACCAGCCCCAGTGGGGGATCAGATGTGGAACCAAAAACAGAAGAAAA
AACTGTGAGAGATTTTGTCTGCCTCTGCCCTGCCTGGGAGTCCACAGGGAGACGATAATC
TCTGTATTTTTTTACTCCCGCTCCCCAGAGGGGCCCCAGAGCCCCCGTTCCTGAATTACA
CAAGAATGTATCATGCCGGGAAGCCAGAGACCTGCTGGGGCCCTGGGCCCCTCACAGTGT
GTGTGTGTGTGTCTCTCCTTGATTTGTGTTTGTGTCCAGTTTGGTTTTGTCTTTTTTATT
TGGCAAGTGGAGGAGGCCTTTGTGTGACTTTTATGTCGTGGTTGGTGTCTTAACTCTCCT
GGGGGAGAGGAGGCTGGCACATACGGGTGCCCCAGCCTGGCTGGATGTGGAATGGTTGGG
GAGGAGCCCTCCAGCGGCTGATGCCCGTGAGGGACAAAGAGGCCGACCAAGGAGGGAGGT
GCCTGTCAGCCAGAGTCTACAGGAGGGTCTGGTCCTGTCCTTCCTCACCCTGAGAGTGAA
GTGCCACCCCCTCCCCAACACGTGTATCTCAACTCCTGGATTCCGTAAGTCCTGCTGGTA
TTGGGCTGGAGCCTGGGAAAGTGGCCCCATCCGTCTCAGTGACCTAAAGCGGGGTATGAA
ATGTAGGCCGAAAAACATGTTCTTTAATTTTAAATTTAGACCCAGGTTCATTAGCAGAGT
CCGTCCCGACTTCCCTTCTCCCTCCTCATTGGTGTTTTCCTGCACCTGCCCCCCAGGACC
TGAAGTGGCCCGAAAGGGGAAGCTGAGCACTGTGAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               3-116, - strand, RNAz p=0.938333
               

               
               155-353, - strand, RNAz p=0.97016

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-116, - strand, RNAz p=0.938333
               

               
               155-353, - strand, RNAz p=0.97016

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               143-277, - strand, RNAmicro p=0.998956
               

               
               183-261, + strand, RNAmicro p=0.992628

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               143-277, - strand, RNAmicro p=0.998956
               

               
               183-261, + strand, RNAmicro p=0.992628

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-905, gnl|bosTau2|chr3 (8428372-8429280)
               

               
               3-905, gnl|Hg17|chr1 (151134777-151136057)
               

               
               3-905, gnl|Mm7|chr3 (90067453-90066603)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-905, gnl|bosTau2|chr3 (8428372-8429280)
               

               
               3-905, gnl|Hg17|chr1 (151134777-151136057)
               

               
               3-905, gnl|Mm7|chr3 (90067453-90066603)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               eep (0.367692)
               

               
               csp (0.161186)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.367692)
               

               
               csp (0.161186)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	3-116, - strand, RNAz p=0.938333
	155-353, - strand, RNAz p=0.97016

	143-277, - strand, RNAmicro p=0.998956
	183-261, + strand, RNAmicro p=0.992628

	3-905, gnl\|bosTau2\|chr3 (8428372-8429280)
	3-905, gnl\|Hg17\|chr1 (151134777-151136057)
	3-905, gnl\|Mm7\|chr3 (90067453-90066603)

	eep (0.367692)
	csp (0.161186)
	jca (0.11396)
	cty (0.10408)
	eje (0.0988338)