Ss1.1-rpigcb_7590.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATGCCCGAGCCGCCGAGAGAGGCGCCACCCGCCCCGTCCAGCCGCCACGCGCAGGCAC TGCAGAGTCAGCGCTGAACTGTGAGGCGGGGCCACCTCATTTCAACTGCCCAGTTCCCAC CAGGACCAAGCTGGAGCCCCTCCCTGGTCCCCTTTAAATTCCCTGCGTGGGTAACTCTTC TCGGATCTAGACCTTACTCACCTCCTTCCTGTTTCTTGAAGGCCCTTCCCACACTCCCCA GACCGAGCCCCCCCATCCCTCACAGGACACCTCCTTTTACCATAATCTCCTCGTTGGTTA CCTTATTTCCTTATTCCTTCCTGGGGTCCCGGGAAATGCCAGCACCCCCATCCACCTTGC AACGCAATGAGTTGGGGGTGTACTTGATGAACCTGAGCATCGCCGATCTGCTGTACATCT GCACGCTGCCACTGTGGGTCGACTACTTCCTGCACCACGACAACTGGATCCACGGCCCCG GCTCCTGCAAGCTCTTTGGGTTCATCTTTTACACCAACATCTACATCAGCATCGCCTTCC TGTGCTGCATCTCGGTGGACCGCTACCTGGCCGTGGCCCACCCACTGCGGTTCGCCCGCC TGCGCCGCGTCAAGACGGCTGTGGCCGTGAGCTCTGTGGTCTGGGCCACGGAGCTGGGTG CCAACTCGGTGCCCCTGTTCCATGATGAGCTCTTCCGTGACCGGTACAACCACACCTTCT GCTTTGAGAAGTTCCCCATGGAGGGCTGGGTGGCCTGNATGAACCTCTACCGGGTCTTCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATGCCCGAGCCGCCGAGAGAGGCGCCACCCGCCCCGTCCAGCCGCCACGCGCAGGCAC TGCAGAGTCAGCGCTGAACTGTGAGGCGGGGCCACCTCATTTCAACTGCCCAGTTCCCAC CAGGACCAAGCTGGAGCCCCTCCCTGGTCCCCTTTAAATTCCCTGCGTGGGTAACTCTTC TCGGATCTAGACCTTACTCACCTCCTTCCTGTTTCTTGAAGGCCCTTCCCACACTCCCCA GACCGAGCCCCCCCATCCCTCACAGGACACCTCCTTTTACCATAATCTCCTCGTTGGTTA CCTTATTTCCTTATTCCTTCCTGGGGTCCCGGGAAATGCCAGCACCCCCATCCACCTTGC AACGCAATGAGTTGGGGGTGTACTTGATGAACCTGAGCATCGCCGATCTGCTGTACATCT GCACGCTGCCACTGTGGGTCGACTACTTCCTGCACCACGACAACTGGATCCACGGCCCCG GCTCCTGCAAGCTCTTTGGGTTCATCTTTTACACCAACATCTACATCAGCATCGCCTTCC TGTGCTGCATCTCGGTGGACCGCTACCTGGCCGTGGCCCACCCACTGCGGTTCGCCCGCC TGCGCCGCGTCAAGACGGCTGTGGCCGTGAGCTCTGTGGTCTGGGCCACGGAGCTGGGTG CCAACTCGGTGCCCCTGTTCCATGATGAGCTCTTCCGTGACCGGTACAACCACACCTTCT GCTTTGAGAAGTTCCCCATGGAGGGCTGGGTGGCCTGNATGAACCTCTACCGGGTCTTCG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 89-271, - strand, RNAz p=0.763233 | |
| 638-757, + strand, RNAz p=0.700783 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 89-271, - strand, RNAz p=0.763233 | |
| 638-757, + strand, RNAz p=0.700783 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 54-342, gnl|bosTau2|chr18 (38312720-38313021) | |
| 54-342, gnl|Hg17|chr19 (50787798-50787507) | |
| 54-342, gnl|Mm7|chr7 (16903761-16904051) | |
| 359-780, gnl|bosTau2|chr18 (38313719-38314140) | |
| 359-780, gnl|canFam2|chr1 (112863185-112862724) | |
| 359-780, gnl|danRer3|chr15 (35070729-35071189) | |
| 359-780, gnl|dasNov1|scaffold_51949 (6492-6031) | |
| 359-780, gnl|echTel1|scaffold_243947 (4831-5292) | |
| 359-780, gnl|fr1|chrUn (241285580-241285034) | |
| 359-780, gnl|galGal2|chr5 (41036591-41037052) | |
| 359-780, gnl|hg17|chr19 (50786373-50786834) | |
| 359-780, gnl|Hg17|chr19 (50786824-50786403) | |
| 359-780, gnl|loxAfr1|scaffold_40918 (12040-11579) | |
| 359-780, gnl|mm7|chr7 (16905128-16904667) | |
| 359-780, gnl|Mm7|chr7 (16904675-16905096) | |
| 359-780, gnl|monDom2|scaffold_205 (758479-758018) | |
| 359-780, gnl|oryCun1|scaffold_188409 (46567-47025) | |
| 359-780, gnl|panTro1|chr20 (48075964-48076425) | |
| 359-780, gnl|rheMac2|chr19 (52040267-52040728) | |
| 359-780, gnl|rn3|chr1 (78665544-78665083) | |
| 359-780, gnl|tetNig1|chr16 (6378368-6377809) | |
| 359-780, gnl|xenTro1|scaffold_105 (1035204-1035668) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-342, gnl|bosTau2|chr18 (38312720-38313021) | |
| 54-342, gnl|Hg17|chr19 (50787798-50787507) | |
| 54-342, gnl|Mm7|chr7 (16903761-16904051) | |
| 359-780, gnl|bosTau2|chr18 (38313719-38314140) | |
| 359-780, gnl|canFam2|chr1 (112863185-112862724) | |
| 359-780, gnl|danRer3|chr15 (35070729-35071189) | |
| 359-780, gnl|dasNov1|scaffold_51949 (6492-6031) | |
| 359-780, gnl|echTel1|scaffold_243947 (4831-5292) | |
| 359-780, gnl|fr1|chrUn (241285580-241285034) | |
| 359-780, gnl|galGal2|chr5 (41036591-41037052) | |
| 359-780, gnl|hg17|chr19 (50786373-50786834) | |
| 359-780, gnl|Hg17|chr19 (50786824-50786403) | |
| 359-780, gnl|loxAfr1|scaffold_40918 (12040-11579) | |
| 359-780, gnl|mm7|chr7 (16905128-16904667) | |
| 359-780, gnl|Mm7|chr7 (16904675-16905096) | |
| 359-780, gnl|monDom2|scaffold_205 (758479-758018) | |
| 359-780, gnl|oryCun1|scaffold_188409 (46567-47025) | |
| 359-780, gnl|panTro1|chr20 (48075964-48076425) | |
| 359-780, gnl|rheMac2|chr19 (52040267-52040728) | |
| 359-780, gnl|rn3|chr1 (78665544-78665083) | |
| 359-780, gnl|tetNig1|chr16 (6378368-6377809) | |
| 359-780, gnl|xenTro1|scaffold_105 (1035204-1035668) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |