Non-Coding RNA Search

Ss1.1-rpigcb_7920.5

Sequence:


               
               CCAGTCCCCAGATTAAGAAGGTCTCTAAGAAGGAGCTCCAGGGCAGGGAGAGCCAGATTG
TCCTCCTCTGATGAGGAGTGCCTGGAGGAAGATTTGCTGAAAAGGAGCCGGCGCCCGCCC
CGGTCCAGGAAGCCCTCCAAGGCAGGAGCAGTGTCCAGCCTAAGGGTGGATGCCGCTTTG
ACATCCAAACTTGTAGACATTAAGGCTGCCACGGAGCAGGGTCCTCCACACAGCCCATGG
GCCCTCGGAGGGGAGAGGCCTGCAGCCTTCGTCCACCACAGATCTTCTGAGCACAAGTCA
TCCTTGGTTCCCCTCGATGCCAGGGAGCATGAATGGATTGTGAAGCTTGCCAGTGGCACT
TGGAATCAGGCGTTGACTTTGTTCTGGCAGGACCCCCAGCTAGCGCTGCACAAAGACTTT
CTGACTGGGTACACTGCCTTGCACTGGATAGCCAAACATGGTGACCTCACGGCCCTTCAG
GACCTGGTCTCAGGTGCACAGAAGGCAGGGATTGCTCTTGATGTAAATGTGAAGTCTGGC
TGTGGGTATACCCCGCTGCACCTTGCAGCCATCCACGGCCACCAGGCGATCATCAGATTG
CTAGTGCAAAGGTTGTCGTCTCGTGTGAATGTCCGGGACAGCAGTGGGAAGAAGCCTTGG
CAGTATCTGACCAGTAATACCTCTGGGGAAATATGGCAGCTACTGGAAGCCCCACGGGGC
AAGCCCATTTTCCCCACCCAGCCCTTGGTTCGAAACTCTTCCCCCACCAGGAAGGCCAAG
AGCCGGGAAATATCTAGAAGTGTCACCCGAAAGAGTTCCTTTGCTGCACTGCTCAAAAGT
CAGCACAACAAATGGAAGTTGGCCAACCAGTATGAGAAATTCCCCACG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGTCCCCAGATTAAGAAGGTCTCTAAGAAGGAGCTCCAGGGCAGGGAGAGCCAGATTG
TCCTCCTCTGATGAGGAGTGCCTGGAGGAAGATTTGCTGAAAAGGAGCCGGCGCCCGCCC
CGGTCCAGGAAGCCCTCCAAGGCAGGAGCAGTGTCCAGCCTAAGGGTGGATGCCGCTTTG
ACATCCAAACTTGTAGACATTAAGGCTGCCACGGAGCAGGGTCCTCCACACAGCCCATGG
GCCCTCGGAGGGGAGAGGCCTGCAGCCTTCGTCCACCACAGATCTTCTGAGCACAAGTCA
TCCTTGGTTCCCCTCGATGCCAGGGAGCATGAATGGATTGTGAAGCTTGCCAGTGGCACT
TGGAATCAGGCGTTGACTTTGTTCTGGCAGGACCCCCAGCTAGCGCTGCACAAAGACTTT
CTGACTGGGTACACTGCCTTGCACTGGATAGCCAAACATGGTGACCTCACGGCCCTTCAG
GACCTGGTCTCAGGTGCACAGAAGGCAGGGATTGCTCTTGATGTAAATGTGAAGTCTGGC
TGTGGGTATACCCCGCTGCACCTTGCAGCCATCCACGGCCACCAGGCGATCATCAGATTG
CTAGTGCAAAGGTTGTCGTCTCGTGTGAATGTCCGGGACAGCAGTGGGAAGAAGCCTTGG
CAGTATCTGACCAGTAATACCTCTGGGGAAATATGGCAGCTACTGGAAGCCCCACGGGGC
AAGCCCATTTTCCCCACCCAGCCCTTGGTTCGAAACTCTTCCCCCACCAGGAAGGCCAAG
AGCCGGGAAATATCTAGAAGTGTCACCCGAAAGAGTTCCTTTGCTGCACTGCTCAAAAGT
CAGCACAACAAATGGAAGTTGGCCAACCAGTATGAGAAATTCCCCACG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               1-271, - strand, RNAz p=0.99785
               

               
               392-511, - strand, RNAz p=0.712979
               

               
               552-886, - strand, RNAz p=0.722194

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-271, - strand, RNAz p=0.99785
               

               
               392-511, - strand, RNAz p=0.712979
               

               
               552-886, - strand, RNAz p=0.722194

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-886, gnl|bosTau2|chr6 (48052470-48051579)
               

               
               1-886, gnl|Hg17|chr4 (78174720-78173832)
               

               
               1-886, gnl|Mm7|chr5 (93030741-93029859)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-886, gnl|bosTau2|chr6 (48052470-48051579)
               

               
               1-886, gnl|Hg17|chr4 (78174720-78173832)
               

               
               1-886, gnl|Mm7|chr5 (93030741-93029859)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.20816)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)

	1-271, - strand, RNAz p=0.99785
	392-511, - strand, RNAz p=0.712979
	552-886, - strand, RNAz p=0.722194

	1-886, gnl\|bosTau2\|chr6 (48052470-48051579)
	1-886, gnl\|Hg17\|chr4 (78174720-78173832)
	1-886, gnl\|Mm7\|chr5 (93030741-93029859)