Non-Coding RNA Search

Ss1.1-rpigcb_7983.5

Sequence:


               
               ATTCACCGTCATGGGAGTCATCAGCGGCCCCCTCCTCGGAGCCTTTGTTCTGGGAATGTT
CCTCCCCTCCTGCAATACGTCGGGCGTCCTGTCCGGGCTGGCGGCGGGCTTGGCGCTGTC
GCTGTGGGTGGCCGTGGGCGCCTCTTTGTACCCGCCTAGTGCGCAGTCCATGGGGGTCCT
GCCGTCGTCGGCCGCCGGCTGCGCTCTGCCTACAGCCAACGCCTCTGGCCTCCAGGACCC
GGTCTTTGCCGTCAACGCCTCCAGCACGGCCTCCAGCCTTGAAACGGACCCTGAACAACC
CATCTTAGCTGCAAGCTTCTACGCCATTTCCTATCTCTATTATGGTGCCCTGGGCACCCT
GAGCACCATACTATGTGGAGCCCTCATCAGCTGCCTGACTGGCCCCACCAAGCGCAGTGC
CCTGGGTCCCGGTCTGCTGTGGTGGGACCTCACACGGCAGACGGCATCGGTGGCCCCCAA
GGAAGAAGTGGCTGCCCTGGATGACAGCCTGATGAAGGGTGCTGAGGAATTGCCTTTGGG
AATCAAGAAGCCTCCTGACTTCCTGTCCACTAATGAGGACCATCTGCTCTTTCTGGGGCA
GAAGGAGGTGAATGGAGCCAGCTCCAAGACCCCAGGCAGTGAACATGACAAAGGTGGATG
CTGAGGCCTGGAAAGGGGCATTGACTTGGCCAAGGTCACAAAGCCAACCAGAGACTCATG
GAGAGCAGCTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCACCGTCATGGGAGTCATCAGCGGCCCCCTCCTCGGAGCCTTTGTTCTGGGAATGTT
CCTCCCCTCCTGCAATACGTCGGGCGTCCTGTCCGGGCTGGCGGCGGGCTTGGCGCTGTC
GCTGTGGGTGGCCGTGGGCGCCTCTTTGTACCCGCCTAGTGCGCAGTCCATGGGGGTCCT
GCCGTCGTCGGCCGCCGGCTGCGCTCTGCCTACAGCCAACGCCTCTGGCCTCCAGGACCC
GGTCTTTGCCGTCAACGCCTCCAGCACGGCCTCCAGCCTTGAAACGGACCCTGAACAACC
CATCTTAGCTGCAAGCTTCTACGCCATTTCCTATCTCTATTATGGTGCCCTGGGCACCCT
GAGCACCATACTATGTGGAGCCCTCATCAGCTGCCTGACTGGCCCCACCAAGCGCAGTGC
CCTGGGTCCCGGTCTGCTGTGGTGGGACCTCACACGGCAGACGGCATCGGTGGCCCCCAA
GGAAGAAGTGGCTGCCCTGGATGACAGCCTGATGAAGGGTGCTGAGGAATTGCCTTTGGG
AATCAAGAAGCCTCCTGACTTCCTGTCCACTAATGAGGACCATCTGCTCTTTCTGGGGCA
GAAGGAGGTGAATGGAGCCAGCTCCAAGACCCCAGGCAGTGAACATGACAAAGGTGGATG
CTGAGGCCTGGAAAGGGGCATTGACTTGGCCAAGGTCACAAAGCCAACCAGAGACTCATG
GAGAGCAGCTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7839589|gb|AAF70339.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7839589|gb|AAF70339.1|

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               82-276, gnl|bosTau2|chr7 (4521716-4521522)
               

               
               82-276, gnl|Hg17|chr19 (17855658-17855855)
               

               
               82-276, gnl|Mm7|chr8 (69342381-69342199)
               


               
               401-518, gnl|bosTau2|chr7 (4518333-4518216)
               

               
               401-518, gnl|canFam2|chr20 (48021585-48021456)
               

               
               401-518, gnl|echTel1|scaffold_270728 (2124-1994)
               

               
               401-518, gnl|fr1|chrUn (280473292-280473159)
               

               
               401-518, gnl|hg17|chr19 (17862655-17862800)
               

               
               401-518, gnl|Hg17|chr19 (17862694-17862811)
               

               
               401-518, gnl|mm7|chr8 (69339559-69339438)
               

               
               401-518, gnl|Mm7|chr8 (69339542-69339425)
               

               
               401-518, gnl|panTro1|chr20 (18855566-18855711)
               

               
               401-518, gnl|rheMac2|chr19 (17461134-17461279)
               

               
               401-518, gnl|rn3|chr16 (19054172-19054305)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               82-276, gnl|bosTau2|chr7 (4521716-4521522)
               

               
               82-276, gnl|Hg17|chr19 (17855658-17855855)
               

               
               82-276, gnl|Mm7|chr8 (69342381-69342199)
               


               
               401-518, gnl|bosTau2|chr7 (4518333-4518216)
               

               
               401-518, gnl|canFam2|chr20 (48021585-48021456)
               

               
               401-518, gnl|echTel1|scaffold_270728 (2124-1994)
               

               
               401-518, gnl|fr1|chrUn (280473292-280473159)
               

               
               401-518, gnl|hg17|chr19 (17862655-17862800)
               

               
               401-518, gnl|Hg17|chr19 (17862694-17862811)
               

               
               401-518, gnl|mm7|chr8 (69339559-69339438)
               

               
               401-518, gnl|Mm7|chr8 (69339542-69339425)
               

               
               401-518, gnl|panTro1|chr20 (18855566-18855711)
               

               
               401-518, gnl|rheMac2|chr19 (17461134-17461279)
               

               
               401-518, gnl|rn3|chr16 (19054172-19054305)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.31224)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)

	82-276, gnl\|bosTau2\|chr7 (4521716-4521522)
	82-276, gnl\|Hg17\|chr19 (17855658-17855855)
	82-276, gnl\|Mm7\|chr8 (69342381-69342199)

	401-518, gnl\|bosTau2\|chr7 (4518333-4518216)
	401-518, gnl\|canFam2\|chr20 (48021585-48021456)
	401-518, gnl\|echTel1\|scaffold_270728 (2124-1994)
	401-518, gnl\|fr1\|chrUn (280473292-280473159)
	401-518, gnl\|hg17\|chr19 (17862655-17862800)
	401-518, gnl\|Hg17\|chr19 (17862694-17862811)
	401-518, gnl\|mm7\|chr8 (69339559-69339438)
	401-518, gnl\|Mm7\|chr8 (69339542-69339425)
	401-518, gnl\|panTro1\|chr20 (18855566-18855711)
	401-518, gnl\|rheMac2\|chr19 (17461134-17461279)
	401-518, gnl\|rn3\|chr16 (19054172-19054305)