Ss1.1-rpigcb_8019.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCGAACCGGCAGCTCAATGACAAATCGGTGGGGTGCGGCTGGGGTCCGGCCCCCGGCA GAGGCGAAGGAGCGGGCGGGGCGGGTTTAAGGGCGGGGGGTCCGGTGCGGACGGCCAGGA GGCGCGGGAAGGTCCAAGCTCTTCCACTGGGTCCTCTGTCCGTGTTTCGTGACCTCAGAA AACCAGCAGGATGGCTGCCAACAAGAGTAAGAGCCAGAGCTCCTTGGCCCTTCACAAGGT GATCATGGTCGGCAGTGGCGGGGTCGGCAAGTCGGCACTGACGCTCCAGTTCATGTACGA TGAGTTCGTAGAAGACTATGAACCCACCAAAGCGGACAGTTACAGAAAGAAAGTGGTTCT TGATGGCGAGGAAGTCCAGATAGATATTCTGGACACGGCTGGCCAGGAGGACTATGCAGC CATTCGAGACAACTACTTCCGAAGTGGGGAGGGTTTCCTCCTCGTGTTCTCAATCACAGA GCATGAATCCTTTACAGCAACTGCTGAATTCAGGGAGCAGATCCTCCGTGTGAAGGCAGA AGAAGATAAAATCCCGCTGCTGGTTGTGGGGAACAAGTCGGACCTGGAGGAGCGGAGGCA GGTGCCAGTGGAGGAGGCCAGGGCCAAGGCCGAGGAGTGGGGCGTGCAGTACGTGGAGAC GTCGGCCAAGACGCGCGCCAACGTGGACAAGGTGTTCTTTGACCTAATGAGAGAGATCAG AGCAAAGAAGATGTCAGAAAACAAAGACAAGAACGGCAAGAAAAGCAGCAAGAACAAGAA GAGTTTTAAGGAGAGGTGCTGCTTACTGTGAAGGCTAAGGTGCTGGGTGCATCAGTCGCC ACTAAGGACAGAGGGCAGGCTCCTCAGAAGGCGACAGTCCACCTCTCGGCCTGTTCCCTG CTCTCCCCAGCCTCACTCACACACACTTCTGTAAATGGGGAAAATATCTGCAGCAGTGGC TGGCAGAAGAAAGAAGCCCTTGACTGTGCAATGGAACAGCTCCTTTGTCAGGAGGTTTCA GAGTTTCTTCCCTCCATCCCTTCCACAAGTTACCCGCATATGTGGTGCTATAGGCAGGAG TTAGCCAAGTGTTAAGTAAAAAGAAAAAGGACTATATCCTGGCTTCTTTCCCCACCCCCT AGTTTTGTAACATTAGCTTCTTTGGTTTTAACATGAAGATGTCTTATTTTATTAGATCTT GACAGCTAGGGGGTGGCTAAGACCTCCCCCCACCCCCCAACCTCTGTCAGCTCTCCAGTA GGTCTCAGAAACATGCATTAGGTTCTAATGACGGCGGAACATTCAGAGATTTTTCTGTAT GAATCTCTTAGCCATCCCCTGTGGGTCTGAAGCAGAGCTAAGAAAATAAATTTGAATTGG ACCATGTGGGTTCATATGAAATCCTTCTCAGTATGAAAAGTGAAAGTCGTATTCTTCATA TTGAAAGATCAGCCAATGGGAGTCTGTGTTGGCTATTTTCCTCCTATAGCAACCTGATTT TTCTGTAAGAGCTTCTTTTTAATAGACTAGGTGAAGGCTCGAGAGCAAAAGTCTATATAA ATGATACAATTTTTTCTAATCAGAATTTAAAACAGCATTCTTTGGCAGAGTCCTCTTCTA GCCTCCAGTCCTGCGGGCGGGCCCCGCCTCCTGCACCAGGAGCCAACAGCTCTGTCCTGT CAGCTTCTCGCTGTTTCATCCCGTGTGACCCGAGTTCCTCTGAAGGACGTGAGGAATTAA GGTGGCATTCTAAAACCGCAAAGCCAGGGCCTGTGCCAGACACCCCACCTCCTCCCGTGG GAATTGCTCATGACTCTGAATTTCAGTTAGAAGTGGGGAACAATGAGAGCAGCCGTCTCC CCTTTACCTCTGAGCATTGGCTACTGTTTCTAATATGCATTTGTTTCTGAGACAGCCGTG GAGTTAGAAGATTTTTATTGGTGAGATGGTTCATCTTTCTTGTATCAATATGCTAAATCC AGCTGTCAGAAAATTTTTCATCAGGCACAGAGTACTGTGATTAAAAACCTTGTGCTCAGC ACATTTTCCCCCCATTTTGCAGAAGTGACATTTCACATACAGGTGCCAAAAGTGAATCGG GGTGGGGAGGATGGGAACCTTTGGGATTTATGGTTATGACAAATTGTAGAAATTATGATC CAACTGGAAAACCATCTTGTATCACCTTCCACAGAATCATGGGCTTTTTGAATAAAAAAA AAAAAAAGCAGACAAATACAGTTTTTAGAATTTCAGCCTTTTTTTTAAATCCTTTTGTCA TACATGTAAAATGTAAGTACTGACATTAAGTTATTCATTAATGCCCTTGTTAGATGTTCT GCAATGTCAAACAAACTTTATTTCAGTTAATTTTTTGAACTGGGCCATGGGAAATAAATG TATAGGTATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCGAACCGGCAGCTCAATGACAAATCGGTGGGGTGCGGCTGGGGTCCGGCCCCCGGCA GAGGCGAAGGAGCGGGCGGGGCGGGTTTAAGGGCGGGGGGTCCGGTGCGGACGGCCAGGA GGCGCGGGAAGGTCCAAGCTCTTCCACTGGGTCCTCTGTCCGTGTTTCGTGACCTCAGAA AACCAGCAGGATGGCTGCCAACAAGAGTAAGAGCCAGAGCTCCTTGGCCCTTCACAAGGT GATCATGGTCGGCAGTGGCGGGGTCGGCAAGTCGGCACTGACGCTCCAGTTCATGTACGA TGAGTTCGTAGAAGACTATGAACCCACCAAAGCGGACAGTTACAGAAAGAAAGTGGTTCT TGATGGCGAGGAAGTCCAGATAGATATTCTGGACACGGCTGGCCAGGAGGACTATGCAGC CATTCGAGACAACTACTTCCGAAGTGGGGAGGGTTTCCTCCTCGTGTTCTCAATCACAGA GCATGAATCCTTTACAGCAACTGCTGAATTCAGGGAGCAGATCCTCCGTGTGAAGGCAGA AGAAGATAAAATCCCGCTGCTGGTTGTGGGGAACAAGTCGGACCTGGAGGAGCGGAGGCA GGTGCCAGTGGAGGAGGCCAGGGCCAAGGCCGAGGAGTGGGGCGTGCAGTACGTGGAGAC GTCGGCCAAGACGCGCGCCAACGTGGACAAGGTGTTCTTTGACCTAATGAGAGAGATCAG AGCAAAGAAGATGTCAGAAAACAAAGACAAGAACGGCAAGAAAAGCAGCAAGAACAAGAA GAGTTTTAAGGAGAGGTGCTGCTTACTGTGAAGGCTAAGGTGCTGGGTGCATCAGTCGCC ACTAAGGACAGAGGGCAGGCTCCTCAGAAGGCGACAGTCCACCTCTCGGCCTGTTCCCTG CTCTCCCCAGCCTCACTCACACACACTTCTGTAAATGGGGAAAATATCTGCAGCAGTGGC TGGCAGAAGAAAGAAGCCCTTGACTGTGCAATGGAACAGCTCCTTTGTCAGGAGGTTTCA GAGTTTCTTCCCTCCATCCCTTCCACAAGTTACCCGCATATGTGGTGCTATAGGCAGGAG TTAGCCAAGTGTTAAGTAAAAAGAAAAAGGACTATATCCTGGCTTCTTTCCCCACCCCCT AGTTTTGTAACATTAGCTTCTTTGGTTTTAACATGAAGATGTCTTATTTTATTAGATCTT GACAGCTAGGGGGTGGCTAAGACCTCCCCCCACCCCCCAACCTCTGTCAGCTCTCCAGTA GGTCTCAGAAACATGCATTAGGTTCTAATGACGGCGGAACATTCAGAGATTTTTCTGTAT GAATCTCTTAGCCATCCCCTGTGGGTCTGAAGCAGAGCTAAGAAAATAAATTTGAATTGG ACCATGTGGGTTCATATGAAATCCTTCTCAGTATGAAAAGTGAAAGTCGTATTCTTCATA TTGAAAGATCAGCCAATGGGAGTCTGTGTTGGCTATTTTCCTCCTATAGCAACCTGATTT TTCTGTAAGAGCTTCTTTTTAATAGACTAGGTGAAGGCTCGAGAGCAAAAGTCTATATAA ATGATACAATTTTTTCTAATCAGAATTTAAAACAGCATTCTTTGGCAGAGTCCTCTTCTA GCCTCCAGTCCTGCGGGCGGGCCCCGCCTCCTGCACCAGGAGCCAACAGCTCTGTCCTGT CAGCTTCTCGCTGTTTCATCCCGTGTGACCCGAGTTCCTCTGAAGGACGTGAGGAATTAA GGTGGCATTCTAAAACCGCAAAGCCAGGGCCTGTGCCAGACACCCCACCTCCTCCCGTGG GAATTGCTCATGACTCTGAATTTCAGTTAGAAGTGGGGAACAATGAGAGCAGCCGTCTCC CCTTTACCTCTGAGCATTGGCTACTGTTTCTAATATGCATTTGTTTCTGAGACAGCCGTG GAGTTAGAAGATTTTTATTGGTGAGATGGTTCATCTTTCTTGTATCAATATGCTAAATCC AGCTGTCAGAAAATTTTTCATCAGGCACAGAGTACTGTGATTAAAAACCTTGTGCTCAGC ACATTTTCCCCCCATTTTGCAGAAGTGACATTTCACATACAGGTGCCAAAAGTGAATCGG GGTGGGGAGGATGGGAACCTTTGGGATTTATGGTTATGACAAATTGTAGAAATTATGATC CAACTGGAAAACCATCTTGTATCACCTTCCACAGAATCATGGGCTTTTTGAATAAAAAAA AAAAAAAGCAGACAAATACAGTTTTTAGAATTTCAGCCTTTTTTTTAAATCCTTTTGTCA TACATGTAAAATGTAAGTACTGACATTAAGTTATTCATTAATGCCCTTGTTAGATGTTCT GCAATGTCAAACAAACTTTATTTCAGTTAATTTTTTGAACTGGGCCATGGGAAATAAATG TATAGGTATAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-109, + strand, RNAz p=0.770606 | |
| 690-847, + strand, RNAz p=0.99299 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-109, + strand, RNAz p=0.770606 | |
| 690-847, + strand, RNAz p=0.99299 |
| Homologous human UTR: 2 entry(ies) | More info |
| Homologous human UTR: 2 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK127675, + | |
| 3' of AK127675, + |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr2 (43593320-43593457) | |
| 1-138, gnl|canFam2|chr19 (32889607-32889088) | |
| 1-138, gnl|echTel1|scaffold_300541 (160677-160068) | |
| 1-138, gnl|hg17|chr2 (120726344-120726963) | |
| 1-138, gnl|Hg17|chr2 (120726660-120726786) | |
| 1-138, gnl|loxAfr1|scaffold_100636 (4030-4689) | |
| 1-138, gnl|mm7|chr1 (119365517-119364938) | |
| 1-138, gnl|Mm7|chr1 (119365234-119365096) | |
| 1-138, gnl|panTro1|chr13 (6755182-6755800) | |
| 1-138, gnl|rheMac2|chr13 (126473233-126473789) | |
| 1-138, gnl|rn3|chr13 (32086839-32087418) | |
| 294-514, gnl|bosTau2|chr2 (43629898-43630118) | |
| 294-514, gnl|canFam2|chr19 (32853085-32852853) | |
| 294-514, gnl|danRer3|chr9 (34245452-34245229) | |
| 294-514, gnl|dasNov1|scaffold_6277 (56898-57130) | |
| 294-514, gnl|echTel1|scaffold_224553 (10987-10779) | |
| 294-514, gnl|fr1|chrUn (136883684-136883903) | |
| 294-514, gnl|galGal2|chr7 (26246015-26246235) | |
| 294-514, gnl|hg17|chr2 (120759672-120759910) | |
| 294-514, gnl|Hg17|chr2 (120759669-120759889) | |
| 294-514, gnl|loxAfr1|scaffold_1301 (49127-49349) | |
| 294-514, gnl|mm7|chr1 (119338652-119338420) | |
| 294-514, gnl|Mm7|chr1 (119338655-119338433) | |
| 294-514, gnl|monDom2|scaffold_2 (9134148-9133910) | |
| 294-514, gnl|oryCun1|scaffold_157637 (12928-13160) | |
| 294-514, gnl|panTro1|chr13 (6789076-6789314) | |
| 294-514, gnl|rheMac2|chr13 (126505326-126505564) | |
| 294-514, gnl|rn3|chr13 (32241231-32241002) | |
| 294-514, gnl|tetNig1|chr3 (1324287-1324062) | |
| 294-514, gnl|xenTro1|scaffold_219 (271712-271493) | |
| 690-1524, gnl|bosTau2|chr2 (45972885-45972068) | |
| 690-1524, gnl|Hg17|chr2 (120766945-120767789) | |
| 690-1524, gnl|Mm7|chr1 (119332346-119331396) | |
| 1685-2412, gnl|bosTau2|chr2 (45971856-45971126) | |
| 1685-2412, gnl|Hg17|chr2 (120767978-120768683) | |
| 1685-2412, gnl|Mm7|chr1 (119331299-119330675) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr2 (43593320-43593457) | |
| 1-138, gnl|canFam2|chr19 (32889607-32889088) | |
| 1-138, gnl|echTel1|scaffold_300541 (160677-160068) | |
| 1-138, gnl|hg17|chr2 (120726344-120726963) | |
| 1-138, gnl|Hg17|chr2 (120726660-120726786) | |
| 1-138, gnl|loxAfr1|scaffold_100636 (4030-4689) | |
| 1-138, gnl|mm7|chr1 (119365517-119364938) | |
| 1-138, gnl|Mm7|chr1 (119365234-119365096) | |
| 1-138, gnl|panTro1|chr13 (6755182-6755800) | |
| 1-138, gnl|rheMac2|chr13 (126473233-126473789) | |
| 1-138, gnl|rn3|chr13 (32086839-32087418) | |
| 294-514, gnl|bosTau2|chr2 (43629898-43630118) | |
| 294-514, gnl|canFam2|chr19 (32853085-32852853) | |
| 294-514, gnl|danRer3|chr9 (34245452-34245229) | |
| 294-514, gnl|dasNov1|scaffold_6277 (56898-57130) | |
| 294-514, gnl|echTel1|scaffold_224553 (10987-10779) | |
| 294-514, gnl|fr1|chrUn (136883684-136883903) | |
| 294-514, gnl|galGal2|chr7 (26246015-26246235) | |
| 294-514, gnl|hg17|chr2 (120759672-120759910) | |
| 294-514, gnl|Hg17|chr2 (120759669-120759889) | |
| 294-514, gnl|loxAfr1|scaffold_1301 (49127-49349) | |
| 294-514, gnl|mm7|chr1 (119338652-119338420) | |
| 294-514, gnl|Mm7|chr1 (119338655-119338433) | |
| 294-514, gnl|monDom2|scaffold_2 (9134148-9133910) | |
| 294-514, gnl|oryCun1|scaffold_157637 (12928-13160) | |
| 294-514, gnl|panTro1|chr13 (6789076-6789314) | |
| 294-514, gnl|rheMac2|chr13 (126505326-126505564) | |
| 294-514, gnl|rn3|chr13 (32241231-32241002) | |
| 294-514, gnl|tetNig1|chr3 (1324287-1324062) | |
| 294-514, gnl|xenTro1|scaffold_219 (271712-271493) | |
| 690-1524, gnl|bosTau2|chr2 (45972885-45972068) | |
| 690-1524, gnl|Hg17|chr2 (120766945-120767789) | |
| 690-1524, gnl|Mm7|chr1 (119332346-119331396) | |
| 1685-2412, gnl|bosTau2|chr2 (45971856-45971126) | |
| 1685-2412, gnl|Hg17|chr2 (120767978-120768683) | |
| 1685-2412, gnl|Mm7|chr1 (119331299-119330675) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| amn (0.417711) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| ute (0.265569) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fco (0.157208) | |
| ctl (0.153069) | |
| eli (0.151814) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| clu (0.119646) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| ute (0.265569) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| nco (0.161734) | |
| fco (0.157208) | |
| ctl (0.153069) | |
| eli (0.151814) | |
| lun (0.150489) | |
| ski (0.146735) | |
| liv (0.146284) | |
| spl (0.143184) | |
| cst (0.140036) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| eru (0.120048) | |
| clu (0.119646) |