Non-Coding RNA Search

Ss1.1-rpigcb_8156.5

Sequence:


               
               GCTCCAGGCACAAATTATATCATAATTTCTTGAATCTTTTGAGCATGATGTGCTGATTGT
TCGGCAGCTATTACTGCTGGGTCATAAATGCAGTTTTCCAATGAAGCTGGTAGAAATGCA
TTTATCCATTGCCCACTCTTTCTTTTCATCAAGCAGCCCCAGATCCAATGGGTGAACTAA
AATTCAAAGAGTTAATAGGACTCAGAGAGACTGTTAATGAGAGCTTTCAGTTTGTCTCAC
TGGCTCTTCCATCCCTAGAACCCTCTGCCTTACCTAAGCAGCCTCTCCATGCAAAAAGGA
AAGAGAAAAATTGATTGGGGTGGACAGTTAAGTAGGCTTTAGAAAGAAACTCATATTTAG
CTTTGTTTTGTATCTATTTGTTTTAAGCAGCAAGCTGACCAAAATCAGGGGAAAAAATCC
AACAACCACTTTCCCACCTTTCTCTTGAAATTTTGTACGTCTCAATTGTGGAGTGAAACT
TTCCAGCATTAACTATTTCAGAGGTTTGATACACAGCTTTCAGGTAACCTTGAGTGTACA
GATGAACTGTTTTAATAAAAATCTTTGAGCAAGTGAGTTCTGGCAAGAAAAAATGCAGCC
CCTTTGCTAGGTGCGGGTGTGAGAAAGAAGACTGAAAACCACTGGTAATTTTTATTTTTA
ATTTCAGGGATTGTGCTATCCTTTTCATAAAAACAGGTGAATGTGATTCAGTCCGGACCG
GTATTTGTCTAAACCAGTGCTGCCCAATAGAAATATAATGCAAACTGTGTAATTAAATTT
TTCTGGTAGCCACATTCATAAGATAAAATCAAGTGAGATTAATAATATTGTTTTAACCCA
ATATATCCAAATTATTTCAACATGTAATCAATATAAAAATTATTGAGATATTTTACTTTT
TCATACTAAGTCTCCAAAATTCAGAGAGTATTTTACAGCTCATCTAAATTTGTACTAGCC
ATATATGCCCAGCGCTCAACAAAAGCACTGTGGCTGATGGCAACCGTATAGGACAGTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCCAGGCACAAATTATATCATAATTTCTTGAATCTTTTGAGCATGATGTGCTGATTGT
TCGGCAGCTATTACTGCTGGGTCATAAATGCAGTTTTCCAATGAAGCTGGTAGAAATGCA
TTTATCCATTGCCCACTCTTTCTTTTCATCAAGCAGCCCCAGATCCAATGGGTGAACTAA
AATTCAAAGAGTTAATAGGACTCAGAGAGACTGTTAATGAGAGCTTTCAGTTTGTCTCAC
TGGCTCTTCCATCCCTAGAACCCTCTGCCTTACCTAAGCAGCCTCTCCATGCAAAAAGGA
AAGAGAAAAATTGATTGGGGTGGACAGTTAAGTAGGCTTTAGAAAGAAACTCATATTTAG
CTTTGTTTTGTATCTATTTGTTTTAAGCAGCAAGCTGACCAAAATCAGGGGAAAAAATCC
AACAACCACTTTCCCACCTTTCTCTTGAAATTTTGTACGTCTCAATTGTGGAGTGAAACT
TTCCAGCATTAACTATTTCAGAGGTTTGATACACAGCTTTCAGGTAACCTTGAGTGTACA
GATGAACTGTTTTAATAAAAATCTTTGAGCAAGTGAGTTCTGGCAAGAAAAAATGCAGCC
CCTTTGCTAGGTGCGGGTGTGAGAAAGAAGACTGAAAACCACTGGTAATTTTTATTTTTA
ATTTCAGGGATTGTGCTATCCTTTTCATAAAAACAGGTGAATGTGATTCAGTCCGGACCG
GTATTTGTCTAAACCAGTGCTGCCCAATAGAAATATAATGCAAACTGTGTAATTAAATTT
TTCTGGTAGCCACATTCATAAGATAAAATCAAGTGAGATTAATAATATTGTTTTAACCCA
ATATATCCAAATTATTTCAACATGTAATCAATATAAAAATTATTGAGATATTTTACTTTT
TCATACTAAGTCTCCAAAATTCAGAGAGTATTTTACAGCTCATCTAAATTTGTACTAGCC
ATATATGCCCAGCGCTCAACAAAAGCACTGTGGCTGATGGCAACCGTATAGGACAGTACA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               624-739, + strand, RNAz p=0.989256

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               624-739, + strand, RNAz p=0.989256

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004473, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004473, +

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               38-256, gnl|bosTau2|chr8 (33081668-33081883)
               

               
               38-256, gnl|canFam2|chr11 (58175722-58176370)
               

               
               38-256, gnl|echTel1|scaffold_310304 (84555-85070)
               

               
               38-256, gnl|hg17|chr9 (97697414-97698108)
               

               
               38-256, gnl|Hg17|chr9 (97697753-97697974)
               

               
               38-256, gnl|loxAfr1|scaffold_17729 (25459-24777)
               

               
               38-256, gnl|mm7|chr4 (46359644-46360233)
               

               
               38-256, gnl|panTro1|chr11_random (45144051-45144745)
               

               
               38-256, gnl|rheMac2|chr15 (38371667-38370980)
               

               
               38-256, gnl|rn3|chr5 (62907622-62908204)
               


               
               322-605, gnl|bosTau2|chr8 (33081918-33082203)
               

               
               322-605, gnl|Hg17|chr9 (97698038-97698315)
               

               
               322-605, gnl|Mm7|chr4 (46360156-46360459)
               


               
               609-1001, gnl|bosTau2|chr8 (33082229-33082628)
               

               
               609-1001, gnl|Hg17|chr9 (97698338-97698743)
               

               
               609-1001, gnl|Mm7|chr4 (46360485-46360930)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               38-256, gnl|bosTau2|chr8 (33081668-33081883)
               

               
               38-256, gnl|canFam2|chr11 (58175722-58176370)
               

               
               38-256, gnl|echTel1|scaffold_310304 (84555-85070)
               

               
               38-256, gnl|hg17|chr9 (97697414-97698108)
               

               
               38-256, gnl|Hg17|chr9 (97697753-97697974)
               

               
               38-256, gnl|loxAfr1|scaffold_17729 (25459-24777)
               

               
               38-256, gnl|mm7|chr4 (46359644-46360233)
               

               
               38-256, gnl|panTro1|chr11_random (45144051-45144745)
               

               
               38-256, gnl|rheMac2|chr15 (38371667-38370980)
               

               
               38-256, gnl|rn3|chr5 (62907622-62908204)
               


               
               322-605, gnl|bosTau2|chr8 (33081918-33082203)
               

               
               322-605, gnl|Hg17|chr9 (97698038-97698315)
               

               
               322-605, gnl|Mm7|chr4 (46360156-46360459)
               


               
               609-1001, gnl|bosTau2|chr8 (33082229-33082628)
               

               
               609-1001, gnl|Hg17|chr9 (97698338-97698743)
               

               
               609-1001, gnl|Mm7|chr4 (46360485-46360930)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.31224)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)

	38-256, gnl\|bosTau2\|chr8 (33081668-33081883)
	38-256, gnl\|canFam2\|chr11 (58175722-58176370)
	38-256, gnl\|echTel1\|scaffold_310304 (84555-85070)
	38-256, gnl\|hg17\|chr9 (97697414-97698108)
	38-256, gnl\|Hg17\|chr9 (97697753-97697974)
	38-256, gnl\|loxAfr1\|scaffold_17729 (25459-24777)
	38-256, gnl\|mm7\|chr4 (46359644-46360233)
	38-256, gnl\|panTro1\|chr11_random (45144051-45144745)
	38-256, gnl\|rheMac2\|chr15 (38371667-38370980)
	38-256, gnl\|rn3\|chr5 (62907622-62908204)

	322-605, gnl\|bosTau2\|chr8 (33081918-33082203)
	322-605, gnl\|Hg17\|chr9 (97698038-97698315)
	322-605, gnl\|Mm7\|chr4 (46360156-46360459)

	609-1001, gnl\|bosTau2\|chr8 (33082229-33082628)
	609-1001, gnl\|Hg17\|chr9 (97698338-97698743)
	609-1001, gnl\|Mm7\|chr4 (46360485-46360930)