Non-Coding RNA Search

Ss1.1-rpigcb_8164.5

Sequence:


               
               AGTAGAAAGAATGGAGAAAGACCATCTCACGAAGTACAGATAATAAAGAATATGCCTCAG
ATGGCAAATTTTGTATACAACATGTATATGCATTTGATACAGACCACACATCATTATCAT
CAGACTTTATTACAGCTACCACCTGCTATGGTAGAAGAAGGTGAGGAAGTTCAAAGTCAG
GATACAGAATTGGAAACAGAAGAAGAGGCCATGCCTGCTCCAGCTGACATCATGCCTACT
CTAATGGATGCCAGCTCCAGTCAAGAAGCCTCAGCCTCTCAGACTGAACCCACCTCCAAT
GAGACTGAGACCACCTCCAGTCAGACAGGAGCTGATTCCAATCCAGAAGCCACCCCTGCC
GAATCTAAGATCACTGCTACTGCGGCAGGACCTGTAGCTACACCAGCAGAGAATAACACC
CCTCCTGATGCCACATCTGCCCCTGGAGAAACCAAGTAGCCAAACTGTAGCCCTTCTTAG
GGAGGACATTTCATTTATAAAGTCTAGGTAAAGTTACTTTTTGCTTTTTTGTATATGCGT
CTGCCATTTTAATGGTACTAATTAATACTAAGTTGTTTTTGGTAGCTGATCTCAATGTTT
ATCTTCTTGGATATATTTTTTAAAATGTGTTTGTATGAACAACTCCAATTTTATTTGTTC
AGCCAGAAAGTAAATAACCATCTCTTTTATATTTTGATCATTGAGTGACTATATCTGTAA
GCATACCTGCATTAAAAGAGTTTTCTGGAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTAGAAAGAATGGAGAAAGACCATCTCACGAAGTACAGATAATAAAGAATATGCCTCAG
ATGGCAAATTTTGTATACAACATGTATATGCATTTGATACAGACCACACATCATTATCAT
CAGACTTTATTACAGCTACCACCTGCTATGGTAGAAGAAGGTGAGGAAGTTCAAAGTCAG
GATACAGAATTGGAAACAGAAGAAGAGGCCATGCCTGCTCCAGCTGACATCATGCCTACT
CTAATGGATGCCAGCTCCAGTCAAGAAGCCTCAGCCTCTCAGACTGAACCCACCTCCAAT
GAGACTGAGACCACCTCCAGTCAGACAGGAGCTGATTCCAATCCAGAAGCCACCCCTGCC
GAATCTAAGATCACTGCTACTGCGGCAGGACCTGTAGCTACACCAGCAGAGAATAACACC
CCTCCTGATGCCACATCTGCCCCTGGAGAAACCAAGTAGCCAAACTGTAGCCCTTCTTAG
GGAGGACATTTCATTTATAAAGTCTAGGTAAAGTTACTTTTTGCTTTTTTGTATATGCGT
CTGCCATTTTAATGGTACTAATTAATACTAAGTTGTTTTTGGTAGCTGATCTCAATGTTT
ATCTTCTTGGATATATTTTTTAAAATGTGTTTGTATGAACAACTCCAATTTTATTTGTTC
AGCCAGAAAGTAAATAACCATCTCTTTTATATTTTGATCATTGAGTGACTATATCTGTAA
GCATACCTGCATTAAAAGAGTTTTCTGGAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6IRU8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6IRU8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               197-393, - strand, RNAz p=0.998358

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               197-393, - strand, RNAz p=0.998358

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               117-744, gnl|bosTau2|chr10 (19187325-19186720)
               

               
               117-744, gnl|Hg17|chr15 (32936606-32936009)
               

               
               117-744, gnl|Mm7|chr2 (113842576-113842020)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-744, gnl|bosTau2|chr10 (19187325-19186720)
               

               
               117-744, gnl|Hg17|chr15 (32936606-32936009)
               

               
               117-744, gnl|Mm7|chr2 (113842576-113842020)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	117-744, gnl\|bosTau2\|chr10 (19187325-19186720)
	117-744, gnl\|Hg17\|chr15 (32936606-32936009)
	117-744, gnl\|Mm7\|chr2 (113842576-113842020)

	mga (0.160205)
	ski (0.146735)
	liv (0.146284)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)
	cty (0.10408)