Ss1.1-rpigcb_8188.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTTGGCTTGTCTTTGATATCACTGTGACCAGCAATCACTGGGTGATTAATCCACAGAACA ATTTGGGCTTGCAGCTCTGTGCAGAAACAGGAGATGGACACAGCATCAGCGTGAAGTCGG CCGGGCTCGTGGGAAGACATGGGCCGCAGTCAAAACAGCCGTTCATGGTGGCCTTCTTTA AGGCGAGCGAGGTACTTCTTCGATCTGTGAGAGCAGCCAACAAACGGAAAAATCAAAACC GCAATAAATCCAGCTCTCATCAGGACTCCTCCAGAATGTCCAGCGTTGGAGATTACAACA CAAGTGAACAAAAACAAGCCTGTAAGAAGCATGAACTCTATGTGAGTTTCCGGGATCTGG GATGGCAGGACTGGATTATAGCGCCAGAAGGATATGCTGCATTTTATTGTGATGGAGAAT GTTCTTTTCCACTCAATGCCCATATGAATGCCACCAACCATGCCATAGTTCAGACTCTGG TCCATCTGATGTTTCCTGACCACGTACCAAAACCTTGCTGTGCGCCAACCAAGTTAAACG CCATCTCTGTGTTGTATTTTGATGACAGCTCCAATGTCATTTTGAAAAAATACAGAAATA TGGTAGTGCGTTCGTGTGGCTGCCACTAATATTAGATAATAATGGGAATAAGGAAAAGAT CTGTATTAAGGTTTATGACTACAATAAAACATATCCTTTCAGATAAAAGGGGAATTTCAT GCAATTAGTCTGGCTCATGTCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTTGGCTTGTCTTTGATATCACTGTGACCAGCAATCACTGGGTGATTAATCCACAGAACA ATTTGGGCTTGCAGCTCTGTGCAGAAACAGGAGATGGACACAGCATCAGCGTGAAGTCGG CCGGGCTCGTGGGAAGACATGGGCCGCAGTCAAAACAGCCGTTCATGGTGGCCTTCTTTA AGGCGAGCGAGGTACTTCTTCGATCTGTGAGAGCAGCCAACAAACGGAAAAATCAAAACC GCAATAAATCCAGCTCTCATCAGGACTCCTCCAGAATGTCCAGCGTTGGAGATTACAACA CAAGTGAACAAAAACAAGCCTGTAAGAAGCATGAACTCTATGTGAGTTTCCGGGATCTGG GATGGCAGGACTGGATTATAGCGCCAGAAGGATATGCTGCATTTTATTGTGATGGAGAAT GTTCTTTTCCACTCAATGCCCATATGAATGCCACCAACCATGCCATAGTTCAGACTCTGG TCCATCTGATGTTTCCTGACCACGTACCAAAACCTTGCTGTGCGCCAACCAAGTTAAACG CCATCTCTGTGTTGTATTTTGATGACAGCTCCAATGTCATTTTGAAAAAATACAGAAATA TGGTAGTGCGTTCGTGTGGCTGCCACTAATATTAGATAATAATGGGAATAAGGAAAAGAT CTGTATTAAGGTTTATGACTACAATAAAACATATCCTTTCAGATAAAAGGGGAATTTCAT GCAATTAGTCTGGCTCATGTCATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 96-291, gnl|bosTau2|chr23 (1258179-1257984) | |
| 96-291, gnl|canFam2|chr12 (26107961-26108136) | |
| 96-291, gnl|danRer3|chr25 (9310879-9311048) | |
| 96-291, gnl|dasNov1|scaffold_28714 (3494-3669) | |
| 96-291, gnl|echTel1|scaffold_317763 (42117-41942) | |
| 96-291, gnl|fr1|chrUn (83319338-83319507) | |
| 96-291, gnl|galGal2|chr3 (85707008-85706830) | |
| 96-291, gnl|hg17|chr6 (55746795-55746970) | |
| 96-291, gnl|Hg17|chr6 (55747001-55746806) | |
| 96-291, gnl|loxAfr1|scaffold_177788 (852-1027) | |
| 96-291, gnl|mm7|chr9 (75910603-75910428) | |
| 96-291, gnl|Mm7|chr9 (75910395-75910590) | |
| 96-291, gnl|monDom2|scaffold_0 (180112343-180112168) | |
| 96-291, gnl|oryCun1|scaffold_113071 (777-602) | |
| 96-291, gnl|panTro1|chr5 (57036155-57036330) | |
| 96-291, gnl|rheMac2|chr4 (55413957-55414132) | |
| 96-291, gnl|rn3|chr8 (80707087-80706912) | |
| 96-291, gnl|tetNig1|chr17 (4386815-4386646) | |
| 96-291, gnl|xenTro1|scaffold_1279 (108270-108441) | |
| 320-607, gnl|bosTau2|chr13 (32142141-32142425) | |
| 320-607, gnl|Hg17|chr20 (6707430-6707714) | |
| 320-607, gnl|Mm7|chr2 (133302262-133302546) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-291, gnl|bosTau2|chr23 (1258179-1257984) | |
| 96-291, gnl|canFam2|chr12 (26107961-26108136) | |
| 96-291, gnl|danRer3|chr25 (9310879-9311048) | |
| 96-291, gnl|dasNov1|scaffold_28714 (3494-3669) | |
| 96-291, gnl|echTel1|scaffold_317763 (42117-41942) | |
| 96-291, gnl|fr1|chrUn (83319338-83319507) | |
| 96-291, gnl|galGal2|chr3 (85707008-85706830) | |
| 96-291, gnl|hg17|chr6 (55746795-55746970) | |
| 96-291, gnl|Hg17|chr6 (55747001-55746806) | |
| 96-291, gnl|loxAfr1|scaffold_177788 (852-1027) | |
| 96-291, gnl|mm7|chr9 (75910603-75910428) | |
| 96-291, gnl|Mm7|chr9 (75910395-75910590) | |
| 96-291, gnl|monDom2|scaffold_0 (180112343-180112168) | |
| 96-291, gnl|oryCun1|scaffold_113071 (777-602) | |
| 96-291, gnl|panTro1|chr5 (57036155-57036330) | |
| 96-291, gnl|rheMac2|chr4 (55413957-55414132) | |
| 96-291, gnl|rn3|chr8 (80707087-80706912) | |
| 96-291, gnl|tetNig1|chr17 (4386815-4386646) | |
| 96-291, gnl|xenTro1|scaffold_1279 (108270-108441) | |
| 320-607, gnl|bosTau2|chr13 (32142141-32142425) | |
| 320-607, gnl|Hg17|chr20 (6707430-6707714) | |
| 320-607, gnl|Mm7|chr2 (133302262-133302546) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| ret (0.128733) | |
| cty (0.10408) |