Ss1.1-rpigcb_8214.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
ACAATTCTACACATGCTGCCGATGTGCTTCATGCCACTGCCTATTTTCTCTGCAAAGAGA GGATAAAGCAAACTTTAGATCCACTTGATGAGGTCGCTGCCCTCATTGCAGCCACTATTC ATGATGTGGACCATCCCGGGAGAACCAACTCCTTCCTCTGCAATGCTGGCAGCGAGCTGG CCATCTTGTATAATGACACTGCAGTGCTGGAGAGCCACCATGCGGCCTTGGCCTTCCAGC TGACCACTGGAGATGATAAATGCAATATCTTTAAAAACATGGAGAGGAATGATTACCGGA CGCTGCGCCAGGGTATTATCGACATGGTCTTAGCCACCGAAATGACAAAGCACTTCGAGC ATGTCAACAAGTTTGTCAACAGCATCAACAAGCCCTTGGCAGCATTAGAAGAAGATGGGG AAACTGATAAAGGTCAAGAAGCCATAAACACTATGCTCAGGACTCTAGAGAACCGGACTC TGATCAANCGAATGCTGATTAAGTGTGCTGATGTCTCCAATCCCTGCCGACCCCTGGAGC AGTGCATTGAGTGGGCCGCACGCATCTCAGAAGATATTTTTCTCAGACTGATGAAGAGAA GCAACAGGACTTGCCTGTGGTGATGCAGTTTTTGACAGATATACCTGCAGCATCCCCAAG TCGCAGATCTCCTTCATTGACTACTTCATCACGGACATGTTCGATGCCTGGGNCGCCTTT GTAGACCTACCTGAGTTAATGCANATCTTGACACAACTTTAATACTGG------------ GAAATGAAGTGC |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
ACAATTCTACACATGCTGCCGATGTGCTTCATGCCACTGCCTATTTTCTCTGCAAAGAGA GGATAAAGCAAACTTTAGATCCACTTGATGAGGTCGCTGCCCTCATTGCAGCCACTATTC ATGATGTGGACCATCCCGGGAGAACCAACTCCTTCCTCTGCAATGCTGGCAGCGAGCTGG CCATCTTGTATAATGACACTGCAGTGCTGGAGAGCCACCATGCGGCCTTGGCCTTCCAGC TGACCACTGGAGATGATAAATGCAATATCTTTAAAAACATGGAGAGGAATGATTACCGGA CGCTGCGCCAGGGTATTATCGACATGGTCTTAGCCACCGAAATGACAAAGCACTTCGAGC ATGTCAACAAGTTTGTCAACAGCATCAACAAGCCCTTGGCAGCATTAGAAGAAGATGGGG AAACTGATAAAGGTCAAGAAGCCATAAACACTATGCTCAGGACTCTAGAGAACCGGACTC TGATCAANCGAATGCTGATTAAGTGTGCTGATGTCTCCAATCCCTGCCGACCCCTGGAGC AGTGCATTGAGTGGGCCGCACGCATCTCAGAAGATATTTTTCTCAGACTGATGAAGAGAA GCAACAGGACTTGCCTGTGGTGATGCAGTTTTTGACAGATATACCTGCAGCATCCCCAAG TCGCAGATCTCCTTCATTGACTACTTCATCACGGACATGTTCGATGCCTGGGNCGCCTTT GTAGACCTACCTGAGTTAATGCANATCTTGACACAACTTTAATACTGG------------ GAAATGAAGTGC |
Coded protein: 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | More info |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
67-193, - strand, RNAz p=0.947163 |
Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
67-193, - strand, RNAz p=0.947163 |
Aligned organism(s): 25 entry(ies) | More info |
Aligned organism(s): 25 entry(ies) | Help | Less info |
67-292, gnl|bosTau2|chr21 (13154040-13154265) | |
67-292, gnl|canFam2|chr3 (57201589-57201834) | |
67-292, gnl|danRer3|chr2 (32366466-32366237) | |
67-292, gnl|dasNov1|scaffold_7108 (6182-5936) | |
67-292, gnl|echTel1|scaffold_253687 (298-53) | |
67-292, gnl|fr1|chrUn (66213582-66213809) | |
67-292, gnl|galGal2|chr10 (11638460-11638709) | |
67-292, gnl|hg17|chr15 (83465012-83465257) | |
67-292, gnl|Hg17|chr15 (83465030-83465255) | |
67-292, gnl|loxAfr1|scaffold_34297 (13746-13991) | |
67-292, gnl|mm7|chr7 (77196627-77196872) | |
67-292, gnl|Mm7|chr7 (77196645-77196870) | |
67-292, gnl|monDom2|scaffold_45 (1303958-1304203) | |
67-292, gnl|oryCun1|scaffold_89310 (5937-6182) | |
67-292, gnl|panTro1|chr16 (84270695-84270940) | |
67-292, gnl|rheMac2|chr7 (64146905-64146660) | |
67-292, gnl|rn3|chr1 (137613218-137613463) | |
67-292, gnl|tetNig1|chr5 (9547148-9547375) | |
67-292, gnl|xenTro1|scaffold_613 (391000-390761) | |
75-287, gnl|bosTau2|chr10 (2457066-2457278) | |
75-287, gnl|Hg17|chr5 (76749816-76750028) | |
75-287, gnl|Mm7|chr13 (92097426-92097214) | |
575-712, gnl|bosTau2|chr10 (2461768-2461906) | |
575-712, gnl|Hg17|chr5 (76757336-76757474) | |
575-712, gnl|Mm7|chr13 (92090805-92090667) |
Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
67-292, gnl|bosTau2|chr21 (13154040-13154265) | |
67-292, gnl|canFam2|chr3 (57201589-57201834) | |
67-292, gnl|danRer3|chr2 (32366466-32366237) | |
67-292, gnl|dasNov1|scaffold_7108 (6182-5936) | |
67-292, gnl|echTel1|scaffold_253687 (298-53) | |
67-292, gnl|fr1|chrUn (66213582-66213809) | |
67-292, gnl|galGal2|chr10 (11638460-11638709) | |
67-292, gnl|hg17|chr15 (83465012-83465257) | |
67-292, gnl|Hg17|chr15 (83465030-83465255) | |
67-292, gnl|loxAfr1|scaffold_34297 (13746-13991) | |
67-292, gnl|mm7|chr7 (77196627-77196872) | |
67-292, gnl|Mm7|chr7 (77196645-77196870) | |
67-292, gnl|monDom2|scaffold_45 (1303958-1304203) | |
67-292, gnl|oryCun1|scaffold_89310 (5937-6182) | |
67-292, gnl|panTro1|chr16 (84270695-84270940) | |
67-292, gnl|rheMac2|chr7 (64146905-64146660) | |
67-292, gnl|rn3|chr1 (137613218-137613463) | |
67-292, gnl|tetNig1|chr5 (9547148-9547375) | |
67-292, gnl|xenTro1|scaffold_613 (391000-390761) | |
75-287, gnl|bosTau2|chr10 (2457066-2457278) | |
75-287, gnl|Hg17|chr5 (76749816-76750028) | |
75-287, gnl|Mm7|chr13 (92097426-92097214) | |
575-712, gnl|bosTau2|chr10 (2461768-2461906) | |
575-712, gnl|Hg17|chr5 (76757336-76757474) | |
575-712, gnl|Mm7|chr13 (92090805-92090667) |
Expressed library(ies): 2 entry(ies) | More info |
Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
ece (0.229305) | |
cty (0.10408) |