Non-Coding RNA Search

Ss1.1-rpigcb_8294.5

Sequence:


               
               AAGGAAAATGGCTGTGAGCACAGTCAAATGTGACCACAGAAGGAGCAAAGCCAGACCGTC
CTTCTGGGTTGGGGAGAGGGACACATGGAATCCAGGGAGGCCTAGAGAAGTGAAGGGACC
TGCCCAATGTCTCAAAGCCAGTCAGCGCTGGAATGCCAGGTCTTGGCCATGCGACTGAGA
GAAGGAAAGAACCAGCTTTGCTGCTGGAGGAGGATGAGGGATAGTTCACAGTTGTCATAG
TTAGAAGAATAGGGCAGCAGGGCTTTATTAGGTAGGTAGGTAGAAGTACTGTAAACCCAA
GGAGTTTGCAAGATTGGAATATGGCTTGCTAGACCTCTAAAAAACTGCAGGCCTAAGGAA
AGTGATTGGATTCAGTGGAAAGAATTCAAAGCATAAACTCAAATCTGCATAAGATTACCA
AGAGCACAGTTCTGCTCAGTGTTATTTTTAGGAGAACAAAATACAAAAAGCTGTTCCTTT
CCCTCAGAAAGTGTTTTCCTAAGCAGTATTAATAGCTTAGAAATTAGAAGCCACTCGTTT
CTCCTTCTGACAACACCATTTTGAAGTATCACTCATCACAGGAGAGTCAGGCCTGCGTGG
AGGAAAAGACAGTTTTAGGGTGGCTCACAGGCCTGGGCAGGCAAGGCTGCCGCCTGTTTG
GCTGGAAATCGGTCTGCGATGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAAAATGGCTGTGAGCACAGTCAAATGTGACCACAGAAGGAGCAAAGCCAGACCGTC
CTTCTGGGTTGGGGAGAGGGACACATGGAATCCAGGGAGGCCTAGAGAAGTGAAGGGACC
TGCCCAATGTCTCAAAGCCAGTCAGCGCTGGAATGCCAGGTCTTGGCCATGCGACTGAGA
GAAGGAAAGAACCAGCTTTGCTGCTGGAGGAGGATGAGGGATAGTTCACAGTTGTCATAG
TTAGAAGAATAGGGCAGCAGGGCTTTATTAGGTAGGTAGGTAGAAGTACTGTAAACCCAA
GGAGTTTGCAAGATTGGAATATGGCTTGCTAGACCTCTAAAAAACTGCAGGCCTAAGGAA
AGTGATTGGATTCAGTGGAAAGAATTCAAAGCATAAACTCAAATCTGCATAAGATTACCA
AGAGCACAGTTCTGCTCAGTGTTATTTTTAGGAGAACAAAATACAAAAAGCTGTTCCTTT
CCCTCAGAAAGTGTTTTCCTAAGCAGTATTAATAGCTTAGAAATTAGAAGCCACTCGTTT
CTCCTTCTGACAACACCATTTTGAAGTATCACTCATCACAGGAGAGTCAGGCCTGCGTGG
AGGAAAAGACAGTTTTAGGGTGGCTCACAGGCCTGGGCAGGCAAGGCTGCCGCCTGTTTG
GCTGGAAATCGGTCTGCGATGTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-116, + strand, RNAz p=0.851035

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-116, + strand, RNAz p=0.851035

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK091271, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK091271, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-647, gnl|bosTau2|chr3 (855794-855179)
               

               
               1-647, gnl|Hg17|chr1 (164781393-164780714)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-647, gnl|bosTau2|chr3 (855794-855179)
               

               
               1-647, gnl|Hg17|chr1 (164781393-164780714)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ese (0.126502)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.126502)
               

               
               cty (0.10408)

	1-647, gnl\|bosTau2\|chr3 (855794-855179)
	1-647, gnl\|Hg17\|chr1 (164781393-164780714)