Non-Coding RNA Search

Ss1.1-rpigcb_8341.5

Sequence:


               
               TGGGTGTGCAGTACCAGTAAACTTGAGGGAAGTATCAGGTTTGCTTAGTCTTTCACTGGA
AGTTTGAACCTTTTCAACTATGACATCAGTGATGTCAGTATGTATAGAACTATATCTTGA
TTTATCAAGAGTATTTTCATTTTCAATCCATAAATGTGGAAATGAACTATGATTAGCAGA
GTTGGGAACTAAGATTGAACTCTGTGGTGCAGCTTTAAGCTCTGCTTATCTCTTCCTCAT
CCCCAGTACCTCTTCCCTATTCCCTTCTTTTTCTATTCTTTCTGGTCCCCACTGCCCTCA
CTCCCACTTTTAAAACCTGGAGACGGAGGCCACCAGCTCAAAACCAGCACAGATGTTCTG
AACTGAATGGAGTGGCTTCTTTTTGTGTAAATTCCTTTTGCCGTAATGGATGCAGTGGAA
TAACAATGGTTACAGGGACCGATCCTGATCCCTGCTCAATGTAGCATTTTTTTGGTTTTA
TTTTCTTAATTAAATAAAAGCAGGGGTAGGTTTCTTTAAACTGCACAAACATGCAAGGAT
TTTTTTAAAAATGGAAACTTCTCTCATGTTATTCAACTAGAGCACTTCAGTTTACAAAAC
AGCAAGTCCATCTTTATGGGAGCCAGCACGAGGAGCTGCGTGCAGATTATGAAGACGCTT
GCTTGGATCCTGTTTCAAAATTCTAGACCAGGGCTACCTTACACAGAGTTGGTCGTTTTA
TTGCCAGAAGATTTCTGTGTAACTTCCTATTCATTGGCTAAAAATTTGGCATTTGAAGAT
GTGGTATTCAGATGGGGTTTTGTCCACCATTATCGAGATTGTAATCATAAAAATCATACC
GGTCATTGATAATTTAGTTTATCCTGAGGCAGTTGACTTGCAGGGTACAGTCTACAAAGC
CTAGGATGTTGCCACTTATTGGTTTACATTTTGGGACACCTCTTAAGTTGTTTTGTAGCA
CTGCAGTTCAAGGTGTTAATATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGTGTGCAGTACCAGTAAACTTGAGGGAAGTATCAGGTTTGCTTAGTCTTTCACTGGA
AGTTTGAACCTTTTCAACTATGACATCAGTGATGTCAGTATGTATAGAACTATATCTTGA
TTTATCAAGAGTATTTTCATTTTCAATCCATAAATGTGGAAATGAACTATGATTAGCAGA
GTTGGGAACTAAGATTGAACTCTGTGGTGCAGCTTTAAGCTCTGCTTATCTCTTCCTCAT
CCCCAGTACCTCTTCCCTATTCCCTTCTTTTTCTATTCTTTCTGGTCCCCACTGCCCTCA
CTCCCACTTTTAAAACCTGGAGACGGAGGCCACCAGCTCAAAACCAGCACAGATGTTCTG
AACTGAATGGAGTGGCTTCTTTTTGTGTAAATTCCTTTTGCCGTAATGGATGCAGTGGAA
TAACAATGGTTACAGGGACCGATCCTGATCCCTGCTCAATGTAGCATTTTTTTGGTTTTA
TTTTCTTAATTAAATAAAAGCAGGGGTAGGTTTCTTTAAACTGCACAAACATGCAAGGAT
TTTTTTAAAAATGGAAACTTCTCTCATGTTATTCAACTAGAGCACTTCAGTTTACAAAAC
AGCAAGTCCATCTTTATGGGAGCCAGCACGAGGAGCTGCGTGCAGATTATGAAGACGCTT
GCTTGGATCCTGTTTCAAAATTCTAGACCAGGGCTACCTTACACAGAGTTGGTCGTTTTA
TTGCCAGAAGATTTCTGTGTAACTTCCTATTCATTGGCTAAAAATTTGGCATTTGAAGAT
GTGGTATTCAGATGGGGTTTTGTCCACCATTATCGAGATTGTAATCATAAAAATCATACC
GGTCATTGATAATTTAGTTTATCCTGAGGCAGTTGACTTGCAGGGTACAGTCTACAAAGC
CTAGGATGTTGCCACTTATTGGTTTACATTTTGGGACACCTCTTAAGTTGTTTTGTAGCA
CTGCAGTTCAAGGTGTTAATATTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               79-237, - strand, RNAz p=0.901572
               

               
               316-549, + strand, RNAz p=0.950734

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               79-237, - strand, RNAz p=0.901572
               

               
               316-549, + strand, RNAz p=0.950734

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               301-423, - strand, RNAmicro p=0.994847

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               301-423, - strand, RNAmicro p=0.994847

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152622, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152622, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-984, gnl|bosTau2|chr20 (12665360-12666337)
               

               
               1-984, gnl|Hg17|chr5 (56254690-56253711)
               

               
               1-984, gnl|Mm7|chr13 (108871685-108872669)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-984, gnl|bosTau2|chr20 (12665360-12666337)
               

               
               1-984, gnl|Hg17|chr5 (56254690-56253711)
               

               
               1-984, gnl|Mm7|chr13 (108871685-108872669)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               cty (0.10408)

	79-237, - strand, RNAz p=0.901572
	316-549, + strand, RNAz p=0.950734

	1-984, gnl\|bosTau2\|chr20 (12665360-12666337)
	1-984, gnl\|Hg17\|chr5 (56254690-56253711)
	1-984, gnl\|Mm7\|chr13 (108871685-108872669)