Non-Coding RNA Search

Ss1.1-rpigcb_8358.5

Sequence:


               
               GCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGTGAGATGAATC
AAAACCAGTGAACTTTTTTTTTTTTCTAATGTTTTTAATTCCCTTTTAACCCAGTGTACT
AGGTCAATCAGGAGGCATCTAGGGTTTAAAATTTTTTTTAATTTAATTTACATATTCCAT
TGTTTTTCAAAACCCCACAATATTCCAAATCGGTCCTGCATAAACTTTCATGCTTATTAG
CTCATCTGGATAAAGAAATCAATTATCACAGTTGCTTTTTGGACTACTTAGTTCTAAGCA
AAACTATCTGTGACTCACCCAAAATTCCTTGAGGAACAAAATCCTGTAGATGCCTCTTGA
TCAGACATAGCCCTAACTCCTTAAAAACTGTAGCAAGAGCTGCACAGTACAAACTCAAAA
AAGAATAATTCGTTTATCTGCTGTCTAAGCCGTATATATCTATCCAGCCAATGTTGGTTA
CCAAATACAAGCTCTAATTGAGGAAGTAACCTTTTTCCAGGGAGGGGTGGGGGGAGGAAT
TTAAAAGGTATCAACTTTTGACCAAAAAATGTTTCCCCTTGTACTGATGCAGCTCTCTCT
TTCTCCCCCACCTCTGGCGAGATAAGAGGGATCATTCATTATAGAAGAAAAGCAAGAAAG
ACTCATAAATGCAATTTCGTGTCTCGCTAGAAAGTGGGTGACTAAACAGCGCAGTCTCCT
TTGCCATCCTCAGACTGTGCTCTGCCTGGTGCCACATGCCTGTGGGTCCCTCTAAAAGCA
CAGACTTTAAATTGAAAGTGTTATTGAAGTACAGCCTCTGATGAGGAGTGGCACTTAAAA
ACTATCTGGGACACCACTATTGGACACAGTCTTGTAGAGGCAGCTGTCCAGTTTTGGTGC
TTGACTTGTGAATAGGAATTGTTAAATGGAAAGATGCTCCAAGAACTAGGTCAAAGCCTA
GTTTTTTTGTTTTTTGTGTTTTTTTTTAAGTCCCCGCTCACAAATAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCTCCCAACATGCTTGATGTTTGGCCTGATCTCCAGGCAAAAGGAGTGAGATGAATC
AAAACCAGTGAACTTTTTTTTTTTTCTAATGTTTTTAATTCCCTTTTAACCCAGTGTACT
AGGTCAATCAGGAGGCATCTAGGGTTTAAAATTTTTTTTAATTTAATTTACATATTCCAT
TGTTTTTCAAAACCCCACAATATTCCAAATCGGTCCTGCATAAACTTTCATGCTTATTAG
CTCATCTGGATAAAGAAATCAATTATCACAGTTGCTTTTTGGACTACTTAGTTCTAAGCA
AAACTATCTGTGACTCACCCAAAATTCCTTGAGGAACAAAATCCTGTAGATGCCTCTTGA
TCAGACATAGCCCTAACTCCTTAAAAACTGTAGCAAGAGCTGCACAGTACAAACTCAAAA
AAGAATAATTCGTTTATCTGCTGTCTAAGCCGTATATATCTATCCAGCCAATGTTGGTTA
CCAAATACAAGCTCTAATTGAGGAAGTAACCTTTTTCCAGGGAGGGGTGGGGGGAGGAAT
TTAAAAGGTATCAACTTTTGACCAAAAAATGTTTCCCCTTGTACTGATGCAGCTCTCTCT
TTCTCCCCCACCTCTGGCGAGATAAGAGGGATCATTCATTATAGAAGAAAAGCAAGAAAG
ACTCATAAATGCAATTTCGTGTCTCGCTAGAAAGTGGGTGACTAAACAGCGCAGTCTCCT
TTGCCATCCTCAGACTGTGCTCTGCCTGGTGCCACATGCCTGTGGGTCCCTCTAAAAGCA
CAGACTTTAAATTGAAAGTGTTATTGAAGTACAGCCTCTGATGAGGAGTGGCACTTAAAA
ACTATCTGGGACACCACTATTGGACACAGTCTTGTAGAGGCAGCTGTCCAGTTTTGGTGC
TTGACTTGTGAATAGGAATTGTTAAATGGAAAGATGCTCCAAGAACTAGGTCAAAGCCTA
GTTTTTTTGTTTTTTGTGTTTTTTTTTAAGTCCCCGCTCACAAATAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               40-178, - strand, RNAz p=0.997531
               

               
               609-980, + strand, RNAz p=0.953334

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-178, - strand, RNAz p=0.997531
               

               
               609-980, + strand, RNAz p=0.953334

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               889-945, + strand, RNAmicro p=0.995454
               

               
               631-739, + strand, RNAmicro p=0.993533

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               889-945, + strand, RNAmicro p=0.995454
               

               
               631-739, + strand, RNAmicro p=0.993533

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of BC039826, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC039826, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-980, gnl|bosTau2|chr15 (14850149-14851139)
               

               
               1-980, gnl|Hg17|chr11 (118126266-118125284)
               

               
               1-980, gnl|Mm7|chr9 (44572554-44573501)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-980, gnl|bosTau2|chr15 (14850149-14851139)
               

               
               1-980, gnl|Hg17|chr11 (118126266-118125284)
               

               
               1-980, gnl|Mm7|chr9 (44572554-44573501)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	40-178, - strand, RNAz p=0.997531
	609-980, + strand, RNAz p=0.953334

	889-945, + strand, RNAmicro p=0.995454
	631-739, + strand, RNAmicro p=0.993533

	1-980, gnl\|bosTau2\|chr15 (14850149-14851139)
	1-980, gnl\|Hg17\|chr11 (118126266-118125284)
	1-980, gnl\|Mm7\|chr9 (44572554-44573501)

	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)
	cty (0.10408)