Non-Coding RNA Search

Ss1.1-rpigcb_8487.5

Sequence:


               
               CAAGAGATAGGAAGCCAGAGAGAAGACGACCAGGATGTGGTAAGTGTAAAGACTGATTNT
ACCAGGACCCAGGCTCTCTCTTTGGGTCCAGTCCCAGCATTCATCCACGTGATTAGCATC
TAGTCCAATGAAGTTCCCCCGGAAAGATTTTCCATTTAAGCAACAATTACTTGATATGAT
TTGCACCTTTTTGTTCTCCTACCATCTAAATGGTGGCCTGTTGTGATATGCACCTTGCCA
CCAAATCAGAGATTCCTTATAGAGATTCCTAATCATTACTTTATTGCATTAGTAGGCTCA
GAGATAGAGCTTGGTTTGAAGTTTGGGTAAGATGAAACCTTTGTTTTGAACCAAGCCTCT
GGGGCTTTGCATTCCCCTCAGTTGGGTGATGGCTGTCTGTTTCACTGCCCCAGGCTATGT
GTGACTAAGGTGCCTGGTTTTTAGCCACAGACAATTCTTTATATGTGACCTCTCAGCTCT
GACCAGGAGTGGAACAGGACTTTAACCAGAAATAGGAGCAGCATCCAGTTCCTAGCTGTT
CACTGCACAGTATTGTATCATAACTGCAGGAAGTTTTTATTTTTAAAACTGGATTTGGGG
TACATTCATTTGCCCCAGTACCTCTGCCTAAAGGTCAAATCCTGGGGCTGCCATGGTTAC
TAGCACATGGATTCTCCTCAATATTGTTCATCAGGGGTCCACATAGGATGGAACAAAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGAGATAGGAAGCCAGAGAGAAGACGACCAGGATGTGGTAAGTGTAAAGACTGATTNT
ACCAGGACCCAGGCTCTCTCTTTGGGTCCAGTCCCAGCATTCATCCACGTGATTAGCATC
TAGTCCAATGAAGTTCCCCCGGAAAGATTTTCCATTTAAGCAACAATTACTTGATATGAT
TTGCACCTTTTTGTTCTCCTACCATCTAAATGGTGGCCTGTTGTGATATGCACCTTGCCA
CCAAATCAGAGATTCCTTATAGAGATTCCTAATCATTACTTTATTGCATTAGTAGGCTCA
GAGATAGAGCTTGGTTTGAAGTTTGGGTAAGATGAAACCTTTGTTTTGAACCAAGCCTCT
GGGGCTTTGCATTCCCCTCAGTTGGGTGATGGCTGTCTGTTTCACTGCCCCAGGCTATGT
GTGACTAAGGTGCCTGGTTTTTAGCCACAGACAATTCTTTATATGTGACCTCTCAGCTCT
GACCAGGAGTGGAACAGGACTTTAACCAGAAATAGGAGCAGCATCCAGTTCCTAGCTGTT
CACTGCACAGTATTGTATCATAACTGCAGGAAGTTTTTATTTTTAAAACTGGATTTGGGG
TACATTCATTTGCCCCAGTACCTCTGCCTAAAGGTCAAATCCTGGGGCTGCCATGGTTAC
TAGCACATGGATTCTCCTCAATATTGTTCATCAGGGGTCCACATAGGATGGAACAAAGAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               501-617, + strand, RNAz p=0.93986

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               501-617, + strand, RNAz p=0.93986

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK127017, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK127017, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-720, gnl|bosTau2|chr26 (11846377-11845652)
               

               
               1-720, gnl|Hg17|chr10 (101901491-101900779)
               

               
               1-720, gnl|Mm7|chr19 (43930429-43929721)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-720, gnl|bosTau2|chr26 (11846377-11845652)
               

               
               1-720, gnl|Hg17|chr10 (101901491-101900779)
               

               
               1-720, gnl|Mm7|chr19 (43930429-43929721)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pla (0.133672)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)
               

               
               cty (0.10408)

	1-720, gnl\|bosTau2\|chr26 (11846377-11845652)
	1-720, gnl\|Hg17\|chr10 (101901491-101900779)
	1-720, gnl\|Mm7\|chr19 (43930429-43929721)