Non-Coding RNA Search

Ss1.1-rpigcb_8647.5

Sequence:


               
               CCGGGACCCCAGAGCCAGTACGTGTGTCGGCTGAACCGAAGTGACAGTGACAGCTCCACC
CTGTCCAAGAAGCCACCTTTTGTTCGAAATTCCTTGGAGCGACGCAGTGTCCGGATGAAG
CGGCCTTCGTCGGTCAAATCCCTGCGCGCAGAGCGCCTGCTCCGCACCTCGCTGGACCTC
GAGTTGGACCTGCAGGCAACCAGGACCTGGCACAGTCAGCTGACCCAGGAGATCTCGGTG
CTGAAGGAGCTCAAGGAGCAGCTGGAACAAGCCAAGAGCCATGGGGAGAAGGAGCTGCCA
CAGTGGTTGCGCGAGGACGAGCGCTTCCGCCTGCTGCTGAGGATGCTGGAGAAGCGGATG
GACCGAGCAGAGCACAAGGGCGAGCTTCACACAGACAAGATGATGCGGACGGCCGCCAAG
GATGTGCACAGGCTTCGAGGCCAGAGCTGTAAGGAGCCCCCAGAAGTGCAGTCTTTCAGG
TCAGCAGTGGGCGCCCGGCCAGCCTGCCCTCCCCTTCCCATCCTGCCTGCCTCCTGCATC
CTCTTTTCTTCGTCTCGCTGCTCGCCGTCCCAGGGTCCCTTCGCAGCAGATGCTCATCCT
CTGCCGGGCCGTCCCTGGCGGTCTGCGAGCGCCGCAGCGCTTTCCCTCGGCTGTCTTCAT
CCGTCCCCGCGCCACTGGGGCTAATTTGTCAGAGCCTCTTCTTTAATGAATGAGCCACCT
GCTCCGGCCTTGCCTCTTAGTGTTGCCATCTCCAGTAACTGTGGAGGACTGGCTGAATGA
TAAATAAGCCGGGGGGTGACGGATGCTTGCCTGGCCTCTGCCTGCTGCCTGCCGGGATCT
CAGGGAGACGCCTGCTTGCCGCCCTGGACCCAGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGGGACCCCAGAGCCAGTACGTGTGTCGGCTGAACCGAAGTGACAGTGACAGCTCCACC
CTGTCCAAGAAGCCACCTTTTGTTCGAAATTCCTTGGAGCGACGCAGTGTCCGGATGAAG
CGGCCTTCGTCGGTCAAATCCCTGCGCGCAGAGCGCCTGCTCCGCACCTCGCTGGACCTC
GAGTTGGACCTGCAGGCAACCAGGACCTGGCACAGTCAGCTGACCCAGGAGATCTCGGTG
CTGAAGGAGCTCAAGGAGCAGCTGGAACAAGCCAAGAGCCATGGGGAGAAGGAGCTGCCA
CAGTGGTTGCGCGAGGACGAGCGCTTCCGCCTGCTGCTGAGGATGCTGGAGAAGCGGATG
GACCGAGCAGAGCACAAGGGCGAGCTTCACACAGACAAGATGATGCGGACGGCCGCCAAG
GATGTGCACAGGCTTCGAGGCCAGAGCTGTAAGGAGCCCCCAGAAGTGCAGTCTTTCAGG
TCAGCAGTGGGCGCCCGGCCAGCCTGCCCTCCCCTTCCCATCCTGCCTGCCTCCTGCATC
CTCTTTTCTTCGTCTCGCTGCTCGCCGTCCCAGGGTCCCTTCGCAGCAGATGCTCATCCT
CTGCCGGGCCGTCCCTGGCGGTCTGCGAGCGCCGCAGCGCTTTCCCTCGGCTGTCTTCAT
CCGTCCCCGCGCCACTGGGGCTAATTTGTCAGAGCCTCTTCTTTAATGAATGAGCCACCT
GCTCCGGCCTTGCCTCTTAGTGTTGCCATCTCCAGTAACTGTGGAGGACTGGCTGAATGA
TAAATAAGCCGGGGGGTGACGGATGCTTGCCTGGCCTCTGCCTGCTGCCTGCCGGGATCT
CAGGGAGACGCCTGCTTGCCGCCCTGGACCCAGGCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|11041473|dbj|BAB17278.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|11041473|dbj|BAB17278.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               357-876, gnl|bosTau2|chr7 (53101935-53101400)
               

               
               357-876, gnl|Hg17|chr5 (167827425-167827965)
               

               
               357-876, gnl|Mm7|chr11 (35694146-35693600)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               357-876, gnl|bosTau2|chr7 (53101935-53101400)
               

               
               357-876, gnl|Hg17|chr5 (167827425-167827965)
               

               
               357-876, gnl|Mm7|chr11 (35694146-35693600)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               pty (0.142714)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pty (0.142714)
               

               
               cty (0.10408)

	357-876, gnl\|bosTau2\|chr7 (53101935-53101400)
	357-876, gnl\|Hg17\|chr5 (167827425-167827965)
	357-876, gnl\|Mm7\|chr11 (35694146-35693600)