Non-Coding RNA Search

Ss1.1-rpigcb_8667.5

Sequence:


               
               GGACGAGGTTCACTTTCATCCTTGTGCCAAGATTGGCAGTTAGGGCTGTGCAAAGGAAGG
AAATCAGATCTTGGTGGGTTTTTTGGTATTGAAAGTACCTTTAGTAACCCAACTGCCATT
TCTACATATTTTTACAGTCTTTGAACATGCACGTCATTGAAAACATTTTTAATTAGTAAA
AAAGTGTGTGAAATGAATGCTTAAAATTCTGTCACGTTAATTGAATTAGATTTAGTGGTA
TGGACTTCTGTACTCCATTTATCCCTTGTATCCAGGGCTTTTGAGTTTCAGCTTAAAGAA
AAGGGTAGAGGGATTACTAGAAATGTCTTTGATAACTAAAAAATCATACCAATTTGCTTA
GAATGAGTATGCCGGGTTAACAGTAGTACCTAGTAATAGGTACAGTGAAGTTTTCTTATC
TAGGAATGTTTGTCATTTGTTGCTTGAAGCTTTATAAACCAGCGTTATATGGTTGCTGAC
ATAACTGGCCAACAAGGTAACAGAGGCCTTGGTTCCCCCAAAGTACTGTACAGGGAGAGA
AATGACGCAGGGAAAGAATTGGGCTAAACTAGTTCCAAGGCACCTGTGACTTCTTTGCTA
AAGGCTCTTTGTTGTAGGCATTTGATGAAGCAATTGCTGAATTGGACACCCTGAATGAAG
AGTCCTACAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACGAGGTTCACTTTCATCCTTGTGCCAAGATTGGCAGTTAGGGCTGTGCAAAGGAAGG
AAATCAGATCTTGGTGGGTTTTTTGGTATTGAAAGTACCTTTAGTAACCCAACTGCCATT
TCTACATATTTTTACAGTCTTTGAACATGCACGTCATTGAAAACATTTTTAATTAGTAAA
AAAGTGTGTGAAATGAATGCTTAAAATTCTGTCACGTTAATTGAATTAGATTTAGTGGTA
TGGACTTCTGTACTCCATTTATCCCTTGTATCCAGGGCTTTTGAGTTTCAGCTTAAAGAA
AAGGGTAGAGGGATTACTAGAAATGTCTTTGATAACTAAAAAATCATACCAATTTGCTTA
GAATGAGTATGCCGGGTTAACAGTAGTACCTAGTAATAGGTACAGTGAAGTTTTCTTATC
TAGGAATGTTTGTCATTTGTTGCTTGAAGCTTTATAAACCAGCGTTATATGGTTGCTGAC
ATAACTGGCCAACAAGGTAACAGAGGCCTTGGTTCCCCCAAAGTACTGTACAGGGAGAGA
AATGACGCAGGGAAAGAATTGGGCTAAACTAGTTCCAAGGCACCTGTGACTTCTTTGCTA
AAGGCTCTTTGTTGTAGGCATTTGATGAAGCAATTGCTGAATTGGACACCCTGAATGAAG
AGTCCTACAAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9PS17_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9PS17_CHICK

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               554-672, + strand, RNAz p=0.903565

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               554-672, + strand, RNAz p=0.903565

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               10-672, gnl|bosTau2|chr13 (55855403-55854745)
               

               
               10-672, gnl|Hg17|chr20 (42967468-42968110)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-672, gnl|bosTau2|chr13 (55855403-55854745)
               

               
               10-672, gnl|Hg17|chr20 (42967468-42968110)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cut (0.169924)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.169924)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)

	10-672, gnl\|bosTau2\|chr13 (55855403-55854745)
	10-672, gnl\|Hg17\|chr20 (42967468-42968110)