Ss1.1-rpigcb_9262.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTACAGGAGGAGCGCCAGCGAGAGGAAGGACAAGGACGGGGATGGGGAGGGGGCTGG GGGAGCCCCTGAGGAGATGCCCGTGGACAGGATCCTGGAGGCAGAGCTTGCCGTGGAGCA GAAGAGTGACCAGGGCGTTGAGGGTCCTGGGGGAACCGGGGGTAGCGGCAGCAGCCCGAA TGACCCTGTGACTAACATCTGTCAGGCAGCTGACAAACAGCTCTTCACACTTGTTGAGTG GGCGAAGAGGATCCCACACTTCTCCTCCTTGCCTCTGGATGACCAGGTCATACTGCTACG GGCAGGCTGGAACGAGCTCCTCATTGCCTCCTTCTCTCACCGGTCCATTGACGTCCGGGA TGGCATCCTCCTCGCCACAGGTCTTCACGTGCACCGCAACTCAGCCCATTCGGCAGGCGT GGGAGCCATCTTTGACCGGTCCCTCTCCAGGGTGCTGACAGAGCTAGTGTCCAAAATGCG TGACATGAGGATGGACAAGACAGAACTTGGCTGCCTGAGGGCAATCATTCTGTTCAATCC AGATGCCAAGGGCCTCTCCAACCCCAGTGAGGTTGAGGTCCTGCGGGAGAAAGTCTACGC GTCACTGGAGACCTATTGCAAACAGAAGTACCCTGAGCAGCAGGGACGGTTCGCCAAGCT GCTGCTGCGTCTTCCTGCTCTCAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTACAGGAGGAGCGCCAGCGAGAGGAAGGACAAGGACGGGGATGGGGAGGGGGCTGG GGGAGCCCCTGAGGAGATGCCCGTGGACAGGATCCTGGAGGCAGAGCTTGCCGTGGAGCA GAAGAGTGACCAGGGCGTTGAGGGTCCTGGGGGAACCGGGGGTAGCGGCAGCAGCCCGAA TGACCCTGTGACTAACATCTGTCAGGCAGCTGACAAACAGCTCTTCACACTTGTTGAGTG GGCGAAGAGGATCCCACACTTCTCCTCCTTGCCTCTGGATGACCAGGTCATACTGCTACG GGCAGGCTGGAACGAGCTCCTCATTGCCTCCTTCTCTCACCGGTCCATTGACGTCCGGGA TGGCATCCTCCTCGCCACAGGTCTTCACGTGCACCGCAACTCAGCCCATTCGGCAGGCGT GGGAGCCATCTTTGACCGGTCCCTCTCCAGGGTGCTGACAGAGCTAGTGTCCAAAATGCG TGACATGAGGATGGACAAGACAGAACTTGGCTGCCTGAGGGCAATCATTCTGTTCAATCC AGATGCCAAGGGCCTCTCCAACCCCAGTGAGGTTGAGGTCCTGCGGGAGAAAGTCTACGC GTCACTGGAGACCTATTGCAAACAGAAGTACCCTGAGCAGCAGGGACGGTTCGCCAAGCT GCTGCTGCGTCTTCCTGCTCTCAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 187-306, - strand, RNAz p=0.877695 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 187-306, - strand, RNAz p=0.877695 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 172-306, gnl|bosTau2|chr11 (85119640-85119773) | |
| 172-306, gnl|canFam2|chr9 (53906607-53906760) | |
| 172-306, gnl|danRer3|chr20 (42534079-42534220) | |
| 172-306, gnl|dasNov1|scaffold_39224 (7292-7448) | |
| 172-306, gnl|echTel1|scaffold_270205 (2606-2457) | |
| 172-306, gnl|fr1|chrUn (63676151-63676000) | |
| 172-306, gnl|galGal2|chr17 (3079368-3079219) | |
| 172-306, gnl|hg17|chr9 (134539449-134539606) | |
| 172-306, gnl|Hg17|chr9 (134539455-134539597) | |
| 172-306, gnl|loxAfr1|scaffold_138635 (1720-1872) | |
| 172-306, gnl|mm7|chr2 (27759607-27759762) | |
| 172-306, gnl|Mm7|chr2 (27759620-27759753) | |
| 172-306, gnl|monDom2|scaffold_51 (11448879-11449035) | |
| 172-306, gnl|oryCun1|scaffold_215205 (204978-205128) | |
| 172-306, gnl|panTro1|chr11 (119415374-119415529) | |
| 172-306, gnl|rheMac2|chr4 (32910498-32910341) | |
| 172-306, gnl|rn3|chr3 (6682268-6682423) | |
| 172-306, gnl|tetNig1|chrUn_random (10506536-10506686) | |
| 172-306, gnl|xenTro1|scaffold_95 (1689979-1689827) | |
| 438-542, gnl|bosTau2|chr23 (5563739-5563843) | |
| 438-542, gnl|canFam2|chr12 (5662201-5662326) | |
| 438-542, gnl|danRer3|chrNA (2742986-2742886) | |
| 438-542, gnl|dasNov1|scaffold_39224 (7972-7847) | |
| 438-542, gnl|echTel1|scaffold_220816 (5619-5494) | |
| 438-542, gnl|fr1|chrUn (220242858-220242755) | |
| 438-542, gnl|galGal2|chr17 (3075483-3075592) | |
| 438-542, gnl|hg17|chr6 (33271108-33271233) | |
| 438-542, gnl|Hg17|chr6 (33271222-33271118) | |
| 438-542, gnl|loxAfr1|scaffold_24101 (10797-10895) | |
| 438-542, gnl|mm7|chr17 (32115819-32115694) | |
| 438-542, gnl|Mm7|chr17 (32115703-32115807) | |
| 438-542, gnl|monDom2|scaffold_42 (15265423-15265299) | |
| 438-542, gnl|oryCun1|scaffold_166833 (7198-7323) | |
| 438-542, gnl|panTro1|chr5 (33716312-33716437) | |
| 438-542, gnl|rheMac2|chr4 (32909797-32909922) | |
| 438-542, gnl|rn3|chr20 (4956006-4956131) | |
| 438-542, gnl|tetNig1|chr8 (6304760-6304596) | |
| 438-542, gnl|xenTro1|scaffold_917 (461147-461237) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 172-306, gnl|bosTau2|chr11 (85119640-85119773) | |
| 172-306, gnl|canFam2|chr9 (53906607-53906760) | |
| 172-306, gnl|danRer3|chr20 (42534079-42534220) | |
| 172-306, gnl|dasNov1|scaffold_39224 (7292-7448) | |
| 172-306, gnl|echTel1|scaffold_270205 (2606-2457) | |
| 172-306, gnl|fr1|chrUn (63676151-63676000) | |
| 172-306, gnl|galGal2|chr17 (3079368-3079219) | |
| 172-306, gnl|hg17|chr9 (134539449-134539606) | |
| 172-306, gnl|Hg17|chr9 (134539455-134539597) | |
| 172-306, gnl|loxAfr1|scaffold_138635 (1720-1872) | |
| 172-306, gnl|mm7|chr2 (27759607-27759762) | |
| 172-306, gnl|Mm7|chr2 (27759620-27759753) | |
| 172-306, gnl|monDom2|scaffold_51 (11448879-11449035) | |
| 172-306, gnl|oryCun1|scaffold_215205 (204978-205128) | |
| 172-306, gnl|panTro1|chr11 (119415374-119415529) | |
| 172-306, gnl|rheMac2|chr4 (32910498-32910341) | |
| 172-306, gnl|rn3|chr3 (6682268-6682423) | |
| 172-306, gnl|tetNig1|chrUn_random (10506536-10506686) | |
| 172-306, gnl|xenTro1|scaffold_95 (1689979-1689827) | |
| 438-542, gnl|bosTau2|chr23 (5563739-5563843) | |
| 438-542, gnl|canFam2|chr12 (5662201-5662326) | |
| 438-542, gnl|danRer3|chrNA (2742986-2742886) | |
| 438-542, gnl|dasNov1|scaffold_39224 (7972-7847) | |
| 438-542, gnl|echTel1|scaffold_220816 (5619-5494) | |
| 438-542, gnl|fr1|chrUn (220242858-220242755) | |
| 438-542, gnl|galGal2|chr17 (3075483-3075592) | |
| 438-542, gnl|hg17|chr6 (33271108-33271233) | |
| 438-542, gnl|Hg17|chr6 (33271222-33271118) | |
| 438-542, gnl|loxAfr1|scaffold_24101 (10797-10895) | |
| 438-542, gnl|mm7|chr17 (32115819-32115694) | |
| 438-542, gnl|Mm7|chr17 (32115703-32115807) | |
| 438-542, gnl|monDom2|scaffold_42 (15265423-15265299) | |
| 438-542, gnl|oryCun1|scaffold_166833 (7198-7323) | |
| 438-542, gnl|panTro1|chr5 (33716312-33716437) | |
| 438-542, gnl|rheMac2|chr4 (32909797-32909922) | |
| 438-542, gnl|rn3|chr20 (4956006-4956131) | |
| 438-542, gnl|tetNig1|chr8 (6304760-6304596) | |
| 438-542, gnl|xenTro1|scaffold_917 (461147-461237) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |