Non-Coding RNA Search

Ss1.1-rpigcb_9362.5

Sequence:


               
               CTCTGGTCACCAGCTGCTCGTCCACCTTTTCTGCTGACCGGCTAGTCCAAAATATCCTTG
GAACAGAAGATGTTATTGTGGAAGTTACTGCCAACGATGCTGTGAGATTTTATCCCTGGA
CCATTGATAATAAATACTATTCAGCAGATATCAATCTGTGTGTGGTGCCAAACAAATTTC
TCATCACTGCAGAGATTGCAGAGTCTGTCCAAGCATTTGTGGTTTACTTTGACAGCACAC
AAACATCTGGTCTTGATAGTGTTTCTTCCTGGCTTCCACTGGCAGAAGCATGGTTACCTG
AGGTGATGATCTTGGTTTGTGATAGAGTGTCTGAAAATGGAGTAAACCGACAAAAAGCTC
AAGAGTGGTGTATCAAACATGGCTTTGAATTGGTAGAACTTAATCCAGAAGAGTTGCCTG
AGGAGGATGATGACTTCCCAGAATCTACAGGAATAAAGCGAATTGTTCAAGCCTTAAATG
CCAATGTCTGGTCCAATGTAGTGATGAAGAATGAGAAGAACCAAGGCTTTAGCCTTCTTA
GCTCATTGGCTGGAGCAAACCATAACATTGGATCAGCAGACACCTGCCATTCAGAGCAGC
CCTGTTTGCCAGCAGCAGAGAGGACTGAAGCTCTCTTGGATCATCGAGGCTGCGACGCTT
CCTCACGAGCAAAGAAAGTTGCATGCAGAAAAGGTGGCCAAAGCCTTTTGGATGGCAATT
GGGGGAGACAGAGATGAGATCGAAGGCCTTTCGTCGGATGAAGAACACTAAATTATTCAT
GCTAGGGCTTGACTAACAGAGACACTAACTCTCTCTGCCTGAGAATCCTTCCTAACTCAC
CCAGTCGTCATTTGCTGAACTTCCCATCATCGTGTTGGCTGCCTGAGTTGTTTGTAGGGT
CCTGTTAATTATAGTTTTTAGTTGGGGGGGTGGTAAAGGAGAACCTTCTCCTCCCTCAGT
GTACTATAAGGGGGTGAGAATGACAGTAGGGAGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGTCACCAGCTGCTCGTCCACCTTTTCTGCTGACCGGCTAGTCCAAAATATCCTTG
GAACAGAAGATGTTATTGTGGAAGTTACTGCCAACGATGCTGTGAGATTTTATCCCTGGA
CCATTGATAATAAATACTATTCAGCAGATATCAATCTGTGTGTGGTGCCAAACAAATTTC
TCATCACTGCAGAGATTGCAGAGTCTGTCCAAGCATTTGTGGTTTACTTTGACAGCACAC
AAACATCTGGTCTTGATAGTGTTTCTTCCTGGCTTCCACTGGCAGAAGCATGGTTACCTG
AGGTGATGATCTTGGTTTGTGATAGAGTGTCTGAAAATGGAGTAAACCGACAAAAAGCTC
AAGAGTGGTGTATCAAACATGGCTTTGAATTGGTAGAACTTAATCCAGAAGAGTTGCCTG
AGGAGGATGATGACTTCCCAGAATCTACAGGAATAAAGCGAATTGTTCAAGCCTTAAATG
CCAATGTCTGGTCCAATGTAGTGATGAAGAATGAGAAGAACCAAGGCTTTAGCCTTCTTA
GCTCATTGGCTGGAGCAAACCATAACATTGGATCAGCAGACACCTGCCATTCAGAGCAGC
CCTGTTTGCCAGCAGCAGAGAGGACTGAAGCTCTCTTGGATCATCGAGGCTGCGACGCTT
CCTCACGAGCAAAGAAAGTTGCATGCAGAAAAGGTGGCCAAAGCCTTTTGGATGGCAATT
GGGGGAGACAGAGATGAGATCGAAGGCCTTTCGTCGGATGAAGAACACTAAATTATTCAT
GCTAGGGCTTGACTAACAGAGACACTAACTCTCTCTGCCTGAGAATCCTTCCTAACTCAC
CCAGTCGTCATTTGCTGAACTTCCCATCATCGTGTTGGCTGCCTGAGTTGTTTGTAGGGT
CCTGTTAATTATAGTTTTTAGTTGGGGGGGTGGTAAAGGAGAACCTTCTCCTCCCTCAGT
GTACTATAAGGGGGTGAGAATGACAGTAGGGAGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61858578|ref|XP_583580.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61858578|ref|XP_583580.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               125-242, + strand, RNAz p=0.581963

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               125-242, + strand, RNAz p=0.581963

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC047026, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC047026, +

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               3-649, gnl|bosTau2|chr18 (46973280-46972636)
               

               
               3-649, gnl|Mm7|chr9 (92721242-92720638)
               


               
               52-242, gnl|bosTau2|chr10 (6247454-6247644)
               

               
               52-242, gnl|Hg17|chr15 (65316212-65316022)
               

               
               52-242, gnl|Mm7|chr9 (63645156-63645346)
               


               
               429-541, gnl|bosTau2|chr10 (6263601-6263714)
               

               
               429-541, gnl|Hg17|chr15 (65311290-65311183)
               

               
               429-541, gnl|Mm7|chr9 (63647617-63647725)
               


               
               692-980, gnl|bosTau2|chr10 (6307747-6308030)
               

               
               692-980, gnl|Hg17|chr15 (65282292-65282012)
               

               
               692-980, gnl|Mm7|chr9 (63668675-63668950)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-649, gnl|bosTau2|chr18 (46973280-46972636)
               

               
               3-649, gnl|Mm7|chr9 (92721242-92720638)
               


               
               52-242, gnl|bosTau2|chr10 (6247454-6247644)
               

               
               52-242, gnl|Hg17|chr15 (65316212-65316022)
               

               
               52-242, gnl|Mm7|chr9 (63645156-63645346)
               


               
               429-541, gnl|bosTau2|chr10 (6263601-6263714)
               

               
               429-541, gnl|Hg17|chr15 (65311290-65311183)
               

               
               429-541, gnl|Mm7|chr9 (63647617-63647725)
               


               
               692-980, gnl|bosTau2|chr10 (6307747-6308030)
               

               
               692-980, gnl|Hg17|chr15 (65282292-65282012)
               

               
               692-980, gnl|Mm7|chr9 (63668675-63668950)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cty (0.31224)
               

               
               tbr (0.154178)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.31224)
               

               
               tbr (0.154178)
               

               
               nca (0.136874)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	3-649, gnl\|bosTau2\|chr18 (46973280-46972636)
	3-649, gnl\|Mm7\|chr9 (92721242-92720638)

	52-242, gnl\|bosTau2\|chr10 (6247454-6247644)
	52-242, gnl\|Hg17\|chr15 (65316212-65316022)
	52-242, gnl\|Mm7\|chr9 (63645156-63645346)

	429-541, gnl\|bosTau2\|chr10 (6263601-6263714)
	429-541, gnl\|Hg17\|chr15 (65311290-65311183)
	429-541, gnl\|Mm7\|chr9 (63647617-63647725)

	692-980, gnl\|bosTau2\|chr10 (6307747-6308030)
	692-980, gnl\|Hg17\|chr15 (65282292-65282012)
	692-980, gnl\|Mm7\|chr9 (63668675-63668950)

	cty (0.31224)
	tbr (0.154178)
	nca (0.136874)
	pgl (0.118483)
	ebs (0.118301)