Non-Coding RNA Search

Ss1.1-rpigcb_9407.5

Sequence:


               
               GCGGACGCGTGGGAGGGCTACTATAAGATTGCTCGTCACTACCGCTGGGCGCTGGGCCAG
GTCTTTGAAAAGTTCAAGTTCTCAGCGGCTGTGGTGGTGGAGGATGATCTGGAGGTGGCT
CCGGACTTTTTTGAGTACTTCCAAGCCACATACCCGCTACTGAGGGCTGACCCGTCACTC
TGGTGTGTGTCTGCCTGGAATGACAATGGCAAAGAGCAGATGGTGGACTCGAGCAAGCCC
GAGCTGCTCTACCGCACAGACTTTTTCCCTGGCCTTGGCTGGCTGCTGTTGGCTGAGCTC
TGGGCCGAACTGGAGCCCAAGTGGCCCAAGGCCTTCTGGGACGACTGGATGCGCCGGCCT
GAGCAGCGGCAGGGCCGGGCCTGTGTTCGGCCTGAAATCTCCAGAACGATGACCTTTGGC
CGCAAGGGTGTGAGCCATGGGCAGTTCTTTGACCAGCACCTCAAGTTTATCAAGCTGAAC
CAGCACTTTGTGCCCTTCACACAGCTGGACTTGTCATACCTGCGACGGGAGGCCTATGAC
AGGGATTTCCTCGCACGCGTCTATGGTGCTCCCCTGCTGCAGGTGGAGAAAGTGAGGACC
AGTGAGCGGAGTGAGCTGGGGGAGGTGCGGGTGCAGTACACAAGCAGGGACAGCTTCAAG
GCCTTCGCCAAGGCCCTGGGAGTCATGGATGACCTCAAGTCTGGTGTCCCCAGGGCCGGC
TACCGGGGCATCGTCAGCTTCTTATTCCGGGGCCGCCGTGTCTACTTGGCTCCCCCTGAG
ACCTGGGATGGCTATGATCCTAGCTGGAATTAGCAGCACCTGCGTGTCCCTCCTGGGCCC
CCTCCTTGATGTATCAGGGGCTAAGATGGGACTGCAGTCCCTGGGCTGCATCATCCTCTG
TGTTTCACCCTTGGGTCCATGTATCCNTTTTTTTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGACGCGTGGGAGGGCTACTATAAGATTGCTCGTCACTACCGCTGGGCGCTGGGCCAG
GTCTTTGAAAAGTTCAAGTTCTCAGCGGCTGTGGTGGTGGAGGATGATCTGGAGGTGGCT
CCGGACTTTTTTGAGTACTTCCAAGCCACATACCCGCTACTGAGGGCTGACCCGTCACTC
TGGTGTGTGTCTGCCTGGAATGACAATGGCAAAGAGCAGATGGTGGACTCGAGCAAGCCC
GAGCTGCTCTACCGCACAGACTTTTTCCCTGGCCTTGGCTGGCTGCTGTTGGCTGAGCTC
TGGGCCGAACTGGAGCCCAAGTGGCCCAAGGCCTTCTGGGACGACTGGATGCGCCGGCCT
GAGCAGCGGCAGGGCCGGGCCTGTGTTCGGCCTGAAATCTCCAGAACGATGACCTTTGGC
CGCAAGGGTGTGAGCCATGGGCAGTTCTTTGACCAGCACCTCAAGTTTATCAAGCTGAAC
CAGCACTTTGTGCCCTTCACACAGCTGGACTTGTCATACCTGCGACGGGAGGCCTATGAC
AGGGATTTCCTCGCACGCGTCTATGGTGCTCCCCTGCTGCAGGTGGAGAAAGTGAGGACC
AGTGAGCGGAGTGAGCTGGGGGAGGTGCGGGTGCAGTACACAAGCAGGGACAGCTTCAAG
GCCTTCGCCAAGGCCCTGGGAGTCATGGATGACCTCAAGTCTGGTGTCCCCAGGGCCGGC
TACCGGGGCATCGTCAGCTTCTTATTCCGGGGCCGCCGTGTCTACTTGGCTCCCCCTGAG
ACCTGGGATGGCTATGATCCTAGCTGGAATTAGCAGCACCTGCGTGTCCCTCCTGGGCCC
CCTCCTTGATGTATCAGGGGCTAAGATGGGACTGCAGTCCCTGGGCTGCATCATCCTCTG
TGTTTCACCCTTGGGTCCATGTATCCNTTTTTTTTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14278311|pdb|1FO8|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14278311|pdb|1FO8|A

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               14-172, - strand, RNAz p=0.645058
               

               
               453-612, - strand, RNAz p=0.824942
               

               
               813-930, + strand, RNAz p=0.553471

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               14-172, - strand, RNAz p=0.645058
               

               
               453-612, - strand, RNAz p=0.824942
               

               
               813-930, + strand, RNAz p=0.553471

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               14-936, gnl|bosTau2|chr7 (22399491-22398567)
               

               
               14-936, gnl|Hg17|chr5 (180152039-180151130)
               

               
               14-936, gnl|Mm7|chr11 (49217993-49218927)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-936, gnl|bosTau2|chr7 (22399491-22398567)
               

               
               14-936, gnl|Hg17|chr5 (180152039-180151130)
               

               
               14-936, gnl|Mm7|chr11 (49217993-49218927)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.11396)
               

               
               cty (0.10408)

	14-172, - strand, RNAz p=0.645058
	453-612, - strand, RNAz p=0.824942
	813-930, + strand, RNAz p=0.553471

	14-936, gnl\|bosTau2\|chr7 (22399491-22398567)
	14-936, gnl\|Hg17\|chr5 (180152039-180151130)
	14-936, gnl\|Mm7\|chr11 (49217993-49218927)