Non-Coding RNA Search

Ss1.1-rpigcb_9459.5

Sequence:


               
               GCCCCAGCTCTCGCACTCCGCCGTGGGGGGCTACTGCAACGGCAACCTGGGCAACATGAG
TGAGCTGCCGCCGTACCAGGACACCATGCGGAACAGCGCGTCGGGCCCCGTGATGGTACG
GCGCCAACCCAGACCCGCGCTTCCCCGCGATCTCCCGCTTCATGGGCCCGACGAGCGGCA
TGAACATGAGCGGCATGGGCGGCCTGGGCTCTCTGGGGGACGTGAGCAAGAATATGGCCC
CGCTACCAAGCGCACCGCGCCGGAAGCGCCGGGTGCTCTTCTCCCAGGCGCAGGTGTATG
AGCTGGAGCGACGCTTCAAGCAGCAAAAGTACCTGTCCGCGCCCGAGCGCGAGCACCTGG
CCAGCATGATCCACCTGACACCCACGCAGGTCAAGATCTGGTTCCAGAATCACCGCTACA
AAATGAAGCGCCAAGCCAAGGACGAGGCAGCACAGCAGCAACTGCAGCAGGATAGCGGCG
GCGGCGGCGGGGGCGCCGGGTGCCAGCAGCAGCAGCAAGCTCAGCAGCAGTCACCACGCC
GCGTGGCTGTGCCAGTCCTGGTGAAAGACGGCAAACCCTGCCAGGCGGGCGCCCCGGCTC
CGGGCGCCGCAAGCCTGCAAGGCCACGCTCAACAGCAGGCGCAGCAACAGGCGCAAGCTG
CTCAGGCGGCGGCGGCAGCTATCTCAGTGGGCAGCGGTGGCCCCGGCCTGGGTGCGCACC
CCGGCCACCAGCCCAGCAGCGCGGGCCAGTCTCCGGACCTGGCGCACCACGCCGCCAGCC
CCGCGGCGCTGCAGGGCCAGGTCTCCAGCCTGTCCCACCTGAACTCCTCGGGCTCGGACT
ATGGCACCATGTCCTGCTCCACCTTGCTATATGGTCGGACCTGGTGAGAGGAATCCGGGC
CGGGCCTAGCCCAGCGCTCTGCCTCATCGCTTCCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCCAGCTCTCGCACTCCGCCGTGGGGGGCTACTGCAACGGCAACCTGGGCAACATGAG
TGAGCTGCCGCCGTACCAGGACACCATGCGGAACAGCGCGTCGGGCCCCGTGATGGTACG
GCGCCAACCCAGACCCGCGCTTCCCCGCGATCTCCCGCTTCATGGGCCCGACGAGCGGCA
TGAACATGAGCGGCATGGGCGGCCTGGGCTCTCTGGGGGACGTGAGCAAGAATATGGCCC
CGCTACCAAGCGCACCGCGCCGGAAGCGCCGGGTGCTCTTCTCCCAGGCGCAGGTGTATG
AGCTGGAGCGACGCTTCAAGCAGCAAAAGTACCTGTCCGCGCCCGAGCGCGAGCACCTGG
CCAGCATGATCCACCTGACACCCACGCAGGTCAAGATCTGGTTCCAGAATCACCGCTACA
AAATGAAGCGCCAAGCCAAGGACGAGGCAGCACAGCAGCAACTGCAGCAGGATAGCGGCG
GCGGCGGCGGGGGCGCCGGGTGCCAGCAGCAGCAGCAAGCTCAGCAGCAGTCACCACGCC
GCGTGGCTGTGCCAGTCCTGGTGAAAGACGGCAAACCCTGCCAGGCGGGCGCCCCGGCTC
CGGGCGCCGCAAGCCTGCAAGGCCACGCTCAACAGCAGGCGCAGCAACAGGCGCAAGCTG
CTCAGGCGGCGGCGGCAGCTATCTCAGTGGGCAGCGGTGGCCCCGGCCTGGGTGCGCACC
CCGGCCACCAGCCCAGCAGCGCGGGCCAGTCTCCGGACCTGGCGCACCACGCCGCCAGCC
CCGCGGCGCTGCAGGGCCAGGTCTCCAGCCTGTCCCACCTGAACTCCTCGGGCTCGGACT
ATGGCACCATGTCCTGCTCCACCTTGCTATATGGTCGGACCTGGTGAGAGGAATCCGGGC
CGGGCCTAGCCCAGCGCTCTGCCTCATCGCTTCCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|32879889|gb|AAP88775.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|32879889|gb|AAP88775.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               230-334, - strand, RNAz p=0.699012

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               230-334, - strand, RNAz p=0.699012

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-148, gnl|bosTau2|chr21 (32613793-32613647)
               

               
               1-148, gnl|Hg17|chr14 (36058089-36057943)
               

               
               1-148, gnl|Mm7|chr12 (54465196-54465050)
               


               
               151-471, gnl|bosTau2|chr13 (25709645-25709971)
               

               
               151-471, gnl|Hg17|chr20 (21325171-21324836)
               

               
               151-471, gnl|Mm7|chr2 (146825346-146825023)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-148, gnl|bosTau2|chr21 (32613793-32613647)
               

               
               1-148, gnl|Hg17|chr14 (36058089-36057943)
               

               
               1-148, gnl|Mm7|chr12 (54465196-54465050)
               


               
               151-471, gnl|bosTau2|chr13 (25709645-25709971)
               

               
               151-471, gnl|Hg17|chr20 (21325171-21324836)
               

               
               151-471, gnl|Mm7|chr2 (146825346-146825023)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.41632)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.41632)

	1-148, gnl\|bosTau2\|chr21 (32613793-32613647)
	1-148, gnl\|Hg17\|chr14 (36058089-36057943)
	1-148, gnl\|Mm7\|chr12 (54465196-54465050)

	151-471, gnl\|bosTau2\|chr13 (25709645-25709971)
	151-471, gnl\|Hg17\|chr20 (21325171-21324836)
	151-471, gnl\|Mm7\|chr2 (146825346-146825023)