Non-Coding RNA Search

Ss1.1-rpigcb_9506.5

Sequence:


               
               CAGATTCCAAAGATGCGGGTCAGGGCCCTCAAGCCATCCTCATTCTGCTGTCGGGGGCCC
TGGCCCTGACCGGGACCTGGGCGGGTCCCCACTCCCTGAGCTATTTCTACACCGCCGTGT
CCCGGCCCGACCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGT
TCGTGCGGTTCGACAGCGACGCCCCGAATCCGAGGGAGGAGCCGCGGGCGCCGTGGATAC
AGCAGGAGGGGCAGGAGTATTGGGATAGGAACACGCAGATTTACAAGGAAACCGCACAGA
TTTACAGAGGGAACCTGCGCACAGCTCTTGGCTACTACAACCAGAGCGAGGCCGGGTCTC
ACACCTTCCAGAGCATGTACGGCTGCGACGTGGGACCAGACGGGCTCCTCCTCCGAGGGT
ACAGTCAGTATGGCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCT
GGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCGATGCGG
CGGAGCGTAGGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGTCGCTCCGCGAATACCTGG
AGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGATTCCAAAGATGCGGGTCAGGGCCCTCAAGCCATCCTCATTCTGCTGTCGGGGGCCC
TGGCCCTGACCGGGACCTGGGCGGGTCCCCACTCCCTGAGCTATTTCTACACCGCCGTGT
CCCGGCCCGACCGCGGGGACTCCCGCTTCATCGCCGTCGGCTACGTGGACGACACGCAGT
TCGTGCGGTTCGACAGCGACGCCCCGAATCCGAGGGAGGAGCCGCGGGCGCCGTGGATAC
AGCAGGAGGGGCAGGAGTATTGGGATAGGAACACGCAGATTTACAAGGAAACCGCACAGA
TTTACAGAGGGAACCTGCGCACAGCTCTTGGCTACTACAACCAGAGCGAGGCCGGGTCTC
ACACCTTCCAGAGCATGTACGGCTGCGACGTGGGACCAGACGGGCTCCTCCTCCGAGGGT
ACAGTCAGTATGGCTACGACGGCGCCGATTACATCGCCCTGAACGAGGACCTGCGCTCCT
GGACCGCGGCGGACACGGCGGCTCAGATCACCAAGCGCAAGTGGGAGGCGGCCGATGCGG
CGGAGCGTAGGAGGAGCTACCTGCAGGGCCTGTGTGTGGAGTCGCTCCGCGAATACCTGG
AGATGGGGAAGGACACGCTGCAGCGCGCAGAGCCTCCAAAGACACATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51507661|emb|CAE46356.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51507661|emb|CAE46356.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               83-355, gnl|bosTau2|chr23 (23096967-23096696)
               

               
               83-355, gnl|Hg17|chr6 (29903802-29904073)
               

               
               83-355, gnl|Mm7|chr17 (34516576-34516305)
               


               
               388-638, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               388-638, gnl|Hg17|chr6 (31347071-31346829)
               

               
               388-638, gnl|Mm7|chr17 (32077846-32077606)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-355, gnl|bosTau2|chr23 (23096967-23096696)
               

               
               83-355, gnl|Hg17|chr6 (29903802-29904073)
               

               
               83-355, gnl|Mm7|chr17 (34516576-34516305)
               


               
               388-638, gnl|bosTau2|chr20 (36655627-36655873)
               

               
               388-638, gnl|Hg17|chr6 (31347071-31346829)
               

               
               388-638, gnl|Mm7|chr17 (32077846-32077606)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cty (0.72856)
               

               
               jca (0.22792)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.72856)
               

               
               jca (0.22792)
               

               
               cov (0.132153)
               

               
               jej (0.0989218)

	83-355, gnl\|bosTau2\|chr23 (23096967-23096696)
	83-355, gnl\|Hg17\|chr6 (29903802-29904073)
	83-355, gnl\|Mm7\|chr17 (34516576-34516305)

	388-638, gnl\|bosTau2\|chr20 (36655627-36655873)
	388-638, gnl\|Hg17\|chr6 (31347071-31346829)
	388-638, gnl\|Mm7\|chr17 (32077846-32077606)