Ss1.1-rpigcb_9667.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCAAGTCCACCAGAGACAACTTCAACAATCTGAATGTCAAAATTCAACGATGAAAAGGGT CTTTGATACCTACATGCTCTTCTTCCAAGTCAACCAATCAGCCACAGCACTGAAGCACGT ATTTGCCTCCTTGAGGCTATTTGTATGCAAGTTTCCTTCAGCCTTCTTCCAAGGACCTGC CGACCTGTGTGGATCATTCTGCTATGAAGTCCTGAAATGCTGTAACCACAGGTCACGGTC AACTCAGACGGAAGCCTCAGCCCTTCTGTATTTTTTCATGAGGAAGAATTTTGAATTTAA CAAGCAGAAGTCAATTGTCCGGTCCCACTTACAACTCATCAAGGCTGTAAGCCAGTTAAT AGCCGATGCTGGGATTGGAGGCTCGCGGTTCCAGCATTCCCTTGCAATTACCAATAATTT TGCTAATGGAGACAAGCAAATGAAAAATAGCAATTTCCCAGCAGAGGTGAAAGATCTGAC TAAACGTATAAGGACTGTTTTGATGGCCACGGCTCAGATGAAGGAGCATGAGAAGGACCC TGAGATGCTGGTGGACCTCCAGTACAGCCTGGCAAACTCCTATGCAAGCACTCCCGAGCT CCGGAGGACCTGGTTGGAGAGCATGGCCAAGATTCATGCAAGAAACGGAGATTTATCCGA GCATTTCTTCACATAGTTTGACTTGGAAGACCGACTCTTCTTGGAAGATCAGTCCTGATG AGAAAAATCGTAAAATGGAAGGTTACTGGAAAATGGAAAAGCTTTGCACACCATCCCAGC TCCCGGAGGACATCACCCCTGTGATAGCAACCCATTACTAACAAGTCCCCGTGGAGGAAG CATGTTCTCTATGGGCTGGCCGGCTTTTCTGAGCATTACACCAAATATTAAAGAAGAAGG AGCAATGAAAGAAGATTCTGGAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCAAGTCCACCAGAGACAACTTCAACAATCTGAATGTCAAAATTCAACGATGAAAAGGGT CTTTGATACCTACATGCTCTTCTTCCAAGTCAACCAATCAGCCACAGCACTGAAGCACGT ATTTGCCTCCTTGAGGCTATTTGTATGCAAGTTTCCTTCAGCCTTCTTCCAAGGACCTGC CGACCTGTGTGGATCATTCTGCTATGAAGTCCTGAAATGCTGTAACCACAGGTCACGGTC AACTCAGACGGAAGCCTCAGCCCTTCTGTATTTTTTCATGAGGAAGAATTTTGAATTTAA CAAGCAGAAGTCAATTGTCCGGTCCCACTTACAACTCATCAAGGCTGTAAGCCAGTTAAT AGCCGATGCTGGGATTGGAGGCTCGCGGTTCCAGCATTCCCTTGCAATTACCAATAATTT TGCTAATGGAGACAAGCAAATGAAAAATAGCAATTTCCCAGCAGAGGTGAAAGATCTGAC TAAACGTATAAGGACTGTTTTGATGGCCACGGCTCAGATGAAGGAGCATGAGAAGGACCC TGAGATGCTGGTGGACCTCCAGTACAGCCTGGCAAACTCCTATGCAAGCACTCCCGAGCT CCGGAGGACCTGGTTGGAGAGCATGGCCAAGATTCATGCAAGAAACGGAGATTTATCCGA GCATTTCTTCACATAGTTTGACTTGGAAGACCGACTCTTCTTGGAAGATCAGTCCTGATG AGAAAAATCGTAAAATGGAAGGTTACTGGAAAATGGAAAAGCTTTGCACACCATCCCAGC TCCCGGAGGACATCACCCCTGTGATAGCAACCCATTACTAACAAGTCCCCGTGGAGGAAG CATGTTCTCTATGGGCTGGCCGGCTTTTCTGAGCATTACACCAAATATTAAAGAAGAAGG AGCAATGAAAGAAGATTCTGGAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 142-334, gnl|bosTau2|chr2 (67496730-67496923) | |
| 142-334, gnl|canFam2|chr25 (40990886-40991115) | |
| 142-334, gnl|danRer3|chr15 (1674110-1674333) | |
| 142-334, gnl|dasNov1|scaffold_33447 (16886-17115) | |
| 142-334, gnl|echTel1|scaffold_310464 (87229-87459) | |
| 142-334, gnl|fr1|chrUn (79187255-79187032) | |
| 142-334, gnl|galGal2|chr9 (5133259-5133032) | |
| 142-334, gnl|hg17|chr2 (225487168-225487398) | |
| 142-334, gnl|Hg17|chr2 (225487379-225487186) | |
| 142-334, gnl|loxAfr1|scaffold_34674 (7000-7230) | |
| 142-334, gnl|mm7|chr1 (80746981-80747210) | |
| 142-334, gnl|Mm7|chr1 (80747192-80746999) | |
| 142-334, gnl|monDom2|scaffold_28 (5752603-5752832) | |
| 142-334, gnl|oryCun1|scaffold_174746 (43952-44181) | |
| 142-334, gnl|panTro1|chr13 (116069743-116069973) | |
| 142-334, gnl|rheMac2|chr12 (88665964-88666193) | |
| 142-334, gnl|rn3|chr9 (80050990-80051218) | |
| 142-334, gnl|tetNig1|chr16 (1184669-1184456) | |
| 142-334, gnl|xenTro1|scaffold_340 (57904-58108) | |
| 455-661, gnl|bosTau2|chr12 (40759734-40759940) | |
| 455-661, gnl|canFam2|chr22 (51863296-51863528) | |
| 455-661, gnl|danRer3|chr6 (7951350-7951581) | |
| 455-661, gnl|dasNov1|scaffold_42989 (399-167) | |
| 455-661, gnl|echTel1|scaffold_286385 (145275-145509) | |
| 455-661, gnl|fr1|chrUn (19342833-19343052) | |
| 455-661, gnl|galGal2|chr1 (137426464-137426232) | |
| 455-661, gnl|hg17|chr13 (98279558-98279791) | |
| 455-661, gnl|Hg17|chr13 (98279768-98279562) | |
| 455-661, gnl|loxAfr1|scaffold_607 (55230-55462) | |
| 455-661, gnl|mm7|chr14 (115984871-115985104) | |
| 455-661, gnl|Mm7|chr14 (115985082-115984876) | |
| 455-661, gnl|monDom2|scaffold_11 (53652778-53652545) | |
| 455-661, gnl|oryCun1|scaffold_214940 (114575-114343) | |
| 455-661, gnl|panTro1|chr14 (81525606-81525839) | |
| 455-661, gnl|rheMac2|chr17 (79204639-79204871) | |
| 455-661, gnl|rn3|chr15 (106691846-106692079) | |
| 455-661, gnl|tetNig1|chr2 (10864418-10864192) | |
| 455-661, gnl|xenTro1|scaffold_587 (12734-12962) | |
| 740-840, gnl|bosTau2|chr2 (67501257-67501358) | |
| 740-840, gnl|canFam2|chr25 (40985787-40985913) | |
| 740-840, gnl|dasNov1|scaffold_33447 (13191-13317) | |
| 740-840, gnl|echTel1|scaffold_310464 (82862-82988) | |
| 740-840, gnl|fr1|chrUn (79188546-79188434) | |
| 740-840, gnl|galGal2|chr9 (5136192-5136066) | |
| 740-840, gnl|hg17|chr2 (225483190-225483316) | |
| 740-840, gnl|Hg17|chr2 (225483296-225483195) | |
| 740-840, gnl|mm7|chr1 (80742904-80743030) | |
| 740-840, gnl|Mm7|chr1 (80743010-80742909) | |
| 740-840, gnl|monDom2|scaffold_28 (5746775-5746901) | |
| 740-840, gnl|oryCun1|scaffold_174746 (39731-39857) | |
| 740-840, gnl|panTro1|chr13 (116065766-116065892) | |
| 740-840, gnl|rheMac2|chr12 (88661994-88662120) | |
| 740-840, gnl|rn3|chr9 (80047030-80047156) | |
| 740-840, gnl|tetNig1|chr16 (1185913-1185782) | |
| 740-840, gnl|xenTro1|scaffold_340 (51369-51498) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 142-334, gnl|bosTau2|chr2 (67496730-67496923) | |
| 142-334, gnl|canFam2|chr25 (40990886-40991115) | |
| 142-334, gnl|danRer3|chr15 (1674110-1674333) | |
| 142-334, gnl|dasNov1|scaffold_33447 (16886-17115) | |
| 142-334, gnl|echTel1|scaffold_310464 (87229-87459) | |
| 142-334, gnl|fr1|chrUn (79187255-79187032) | |
| 142-334, gnl|galGal2|chr9 (5133259-5133032) | |
| 142-334, gnl|hg17|chr2 (225487168-225487398) | |
| 142-334, gnl|Hg17|chr2 (225487379-225487186) | |
| 142-334, gnl|loxAfr1|scaffold_34674 (7000-7230) | |
| 142-334, gnl|mm7|chr1 (80746981-80747210) | |
| 142-334, gnl|Mm7|chr1 (80747192-80746999) | |
| 142-334, gnl|monDom2|scaffold_28 (5752603-5752832) | |
| 142-334, gnl|oryCun1|scaffold_174746 (43952-44181) | |
| 142-334, gnl|panTro1|chr13 (116069743-116069973) | |
| 142-334, gnl|rheMac2|chr12 (88665964-88666193) | |
| 142-334, gnl|rn3|chr9 (80050990-80051218) | |
| 142-334, gnl|tetNig1|chr16 (1184669-1184456) | |
| 142-334, gnl|xenTro1|scaffold_340 (57904-58108) | |
| 455-661, gnl|bosTau2|chr12 (40759734-40759940) | |
| 455-661, gnl|canFam2|chr22 (51863296-51863528) | |
| 455-661, gnl|danRer3|chr6 (7951350-7951581) | |
| 455-661, gnl|dasNov1|scaffold_42989 (399-167) | |
| 455-661, gnl|echTel1|scaffold_286385 (145275-145509) | |
| 455-661, gnl|fr1|chrUn (19342833-19343052) | |
| 455-661, gnl|galGal2|chr1 (137426464-137426232) | |
| 455-661, gnl|hg17|chr13 (98279558-98279791) | |
| 455-661, gnl|Hg17|chr13 (98279768-98279562) | |
| 455-661, gnl|loxAfr1|scaffold_607 (55230-55462) | |
| 455-661, gnl|mm7|chr14 (115984871-115985104) | |
| 455-661, gnl|Mm7|chr14 (115985082-115984876) | |
| 455-661, gnl|monDom2|scaffold_11 (53652778-53652545) | |
| 455-661, gnl|oryCun1|scaffold_214940 (114575-114343) | |
| 455-661, gnl|panTro1|chr14 (81525606-81525839) | |
| 455-661, gnl|rheMac2|chr17 (79204639-79204871) | |
| 455-661, gnl|rn3|chr15 (106691846-106692079) | |
| 455-661, gnl|tetNig1|chr2 (10864418-10864192) | |
| 455-661, gnl|xenTro1|scaffold_587 (12734-12962) | |
| 740-840, gnl|bosTau2|chr2 (67501257-67501358) | |
| 740-840, gnl|canFam2|chr25 (40985787-40985913) | |
| 740-840, gnl|dasNov1|scaffold_33447 (13191-13317) | |
| 740-840, gnl|echTel1|scaffold_310464 (82862-82988) | |
| 740-840, gnl|fr1|chrUn (79188546-79188434) | |
| 740-840, gnl|galGal2|chr9 (5136192-5136066) | |
| 740-840, gnl|hg17|chr2 (225483190-225483316) | |
| 740-840, gnl|Hg17|chr2 (225483296-225483195) | |
| 740-840, gnl|mm7|chr1 (80742904-80743030) | |
| 740-840, gnl|Mm7|chr1 (80743010-80742909) | |
| 740-840, gnl|monDom2|scaffold_28 (5746775-5746901) | |
| 740-840, gnl|oryCun1|scaffold_174746 (39731-39857) | |
| 740-840, gnl|panTro1|chr13 (116065766-116065892) | |
| 740-840, gnl|rheMac2|chr12 (88661994-88662120) | |
| 740-840, gnl|rn3|chr9 (80047030-80047156) | |
| 740-840, gnl|tetNig1|chr16 (1185913-1185782) | |
| 740-840, gnl|xenTro1|scaffold_340 (51369-51498) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |