Non-Coding RNA Search

Ss1.1-rpigcb_9677.5

Sequence:


               
               CTCCTGCACCTGTTTCTCTTGCACCTGCTGCACAGCTGCTCCTACCCAGCTCTCCCGGCC
CGAGCCTTGCCTGGTGTGCGGGTGGCACCCCGGAGGCACCCCCACCTCCCGCCAGTCTCC
CTGGGGGCAGCTCCTACACTCTGCTCCTTCTCTAGGGCATCTCTCGACTCCAGTCCGGAG
CAGTCAGGATAACAGAAAGCCCCACAGCGCCATGACCGAAGTTGGTTGGTGGAAGCTGAC
CTTCCTCCGGAAAAAGAAATCCACCCCCAAGGTGTTGTATGAGATCCCTGACACCTACGC
CCAGAGCGAGGGCGGTGCGGAGCCCCCGAGGCCGGACAGCGGGAGCCCAGACAGCGAGTT
TAACACCCGCCTGGAGAAGATTGTGGACAAGAACACGAAGGGCAAGCACGTCAAAGTCTC
CAATTCGGGCCGCTTCAAAGAGAAGAAAAAAATCCGGGCCACGCTGGCGGAGAACCCCAG
CCTCTTTGATGACAGGGAGGGCAAAGGACAGTGAAGGGGACCAAGGAGGATGCTAGGCAC
CTCCTGGCTCGCTGCCATCAGCTGGCTCTGAGACGGGAGCTTGCCACGCTGGCCTCTTTG
GCCACAGCTGAAGCCGTGGGGGTAGGTGATGCCTGCTGGCAGGAAAGGTCTGGTTTTAGG
TTGGTATTTATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCTGCACCTGTTTCTCTTGCACCTGCTGCACAGCTGCTCCTACCCAGCTCTCCCGGCC
CGAGCCTTGCCTGGTGTGCGGGTGGCACCCCGGAGGCACCCCCACCTCCCGCCAGTCTCC
CTGGGGGCAGCTCCTACACTCTGCTCCTTCTCTAGGGCATCTCTCGACTCCAGTCCGGAG
CAGTCAGGATAACAGAAAGCCCCACAGCGCCATGACCGAAGTTGGTTGGTGGAAGCTGAC
CTTCCTCCGGAAAAAGAAATCCACCCCCAAGGTGTTGTATGAGATCCCTGACACCTACGC
CCAGAGCGAGGGCGGTGCGGAGCCCCCGAGGCCGGACAGCGGGAGCCCAGACAGCGAGTT
TAACACCCGCCTGGAGAAGATTGTGGACAAGAACACGAAGGGCAAGCACGTCAAAGTCTC
CAATTCGGGCCGCTTCAAAGAGAAGAAAAAAATCCGGGCCACGCTGGCGGAGAACCCCAG
CCTCTTTGATGACAGGGAGGGCAAAGGACAGTGAAGGGGACCAAGGAGGATGCTAGGCAC
CTCCTGGCTCGCTGCCATCAGCTGGCTCTGAGACGGGAGCTTGCCACGCTGGCCTCTTTG
GCCACAGCTGAAGCCGTGGGGGTAGGTGATGCCTGCTGGCAGGAAAGGTCTGGTTTTAGG
TTGGTATTTATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21706810|gb|AAH34192.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21706810|gb|AAH34192.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               20-158, - strand, RNAz p=0.998301
               

               
               445-672, + strand, RNAz p=0.760172

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               20-158, - strand, RNAz p=0.998301
               

               
               445-672, + strand, RNAz p=0.760172

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_024320, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_024320, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-195, gnl|bosTau2|chr12 (29016375-29016189)
               

               
               2-195, gnl|canFam2|chr9 (27594579-27595935)
               

               
               2-195, gnl|hg17|chr17 (43389285-43390659)
               

               
               2-195, gnl|Hg17|chr17 (43390210-43390022)
               

               
               2-195, gnl|loxAfr1|scaffold_144775 (1413-4)
               

               
               2-195, gnl|mm7|chr11 (97039220-97037931)
               

               
               2-195, gnl|Mm7|chr11 (97038366-97038548)
               

               
               2-195, gnl|monDom2|scaffold_18 (46521024-46519439)
               

               
               2-195, gnl|oryCun1|scaffold_174495 (11895-13174)
               

               
               2-195, gnl|panTro1|chr19_random (42324900-42326272)
               

               
               2-195, gnl|rheMac2|chr16 (32170643-32172014)
               


               
               208-672, gnl|bosTau2|chr12 (29012091-29011628)
               

               
               208-672, gnl|Hg17|chr17 (43385603-43385132)
               

               
               208-672, gnl|Mm7|chr11 (97043581-97044037)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-195, gnl|bosTau2|chr12 (29016375-29016189)
               

               
               2-195, gnl|canFam2|chr9 (27594579-27595935)
               

               
               2-195, gnl|hg17|chr17 (43389285-43390659)
               

               
               2-195, gnl|Hg17|chr17 (43390210-43390022)
               

               
               2-195, gnl|loxAfr1|scaffold_144775 (1413-4)
               

               
               2-195, gnl|mm7|chr11 (97039220-97037931)
               

               
               2-195, gnl|Mm7|chr11 (97038366-97038548)
               

               
               2-195, gnl|monDom2|scaffold_18 (46521024-46519439)
               

               
               2-195, gnl|oryCun1|scaffold_174495 (11895-13174)
               

               
               2-195, gnl|panTro1|chr19_random (42324900-42326272)
               

               
               2-195, gnl|rheMac2|chr16 (32170643-32172014)
               


               
               208-672, gnl|bosTau2|chr12 (29012091-29011628)
               

               
               208-672, gnl|Hg17|chr17 (43385603-43385132)
               

               
               208-672, gnl|Mm7|chr11 (97043581-97044037)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	20-158, - strand, RNAz p=0.998301
	445-672, + strand, RNAz p=0.760172

	2-195, gnl\|bosTau2\|chr12 (29016375-29016189)
	2-195, gnl\|canFam2\|chr9 (27594579-27595935)
	2-195, gnl\|hg17\|chr17 (43389285-43390659)
	2-195, gnl\|Hg17\|chr17 (43390210-43390022)
	2-195, gnl\|loxAfr1\|scaffold_144775 (1413-4)
	2-195, gnl\|mm7\|chr11 (97039220-97037931)
	2-195, gnl\|Mm7\|chr11 (97038366-97038548)
	2-195, gnl\|monDom2\|scaffold_18 (46521024-46519439)
	2-195, gnl\|oryCun1\|scaffold_174495 (11895-13174)
	2-195, gnl\|panTro1\|chr19_random (42324900-42326272)
	2-195, gnl\|rheMac2\|chr16 (32170643-32172014)

	208-672, gnl\|bosTau2\|chr12 (29012091-29011628)
	208-672, gnl\|Hg17\|chr17 (43385603-43385132)
	208-672, gnl\|Mm7\|chr11 (97043581-97044037)