Non-Coding RNA Search

Ss1.1-rpigcb_9811.5

Sequence:


               
               AAGTTGGCGGCTGGGCGTGAGGGCTTGAGGTAGCTGGTTTGTGAGGGGGTCTGGTGTGTG
GTTTCGTCTGGGGGCACTCCGGTCGCTTAAGTACCTCAAAGGGCAGGTTGCAGAAGGAGG
CCCAGGAGGTCTGTGCCTCAGAGGAAAGGCCCACGGCAGTTCGAGGTCCTGAGCCGGGAA
TGCAGGATGGCGGCGATGCAGAAGGGAAGCGGTGTTCCGAGTGAAGTCACATCCTTGGAG
GGAGATGAATGGGAGCTGAGTAAAGAAAATGTCCAACCTTTAAGGCAGGGGCGGATCATG
TCTACACTTCAGGGAGCACTGGCACAGCAAGAATCTACCTGTAACACCACTCTTCAGCAG
CAGAAACGGTGGGTGTGTAGAATGGTTGGTGCCCAACCTGCCATCATTTATCCTCAACTG
TGCTGGGTGATACCGGTGTGGATCCTTGCAGGGTAGAATAAGTAGTACTACTCTTCAAAA
GATGGTAGCATGAGAATCTGTTACCTTCCTGCTTTCCTACCACATAGCAGCTATCTAAAG
GTCTCAAGTGCAATTAAGAACAAGAGCTATAGGATTTCTTTATTTTTGGCTGCACCCACA
GCATATGTAAGTTTCTGGGCCAGGGATCAAATCTTCCACAGCTGCAGCAAGGCTGGATCC
TTCACCTACCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTTGGCGGCTGGGCGTGAGGGCTTGAGGTAGCTGGTTTGTGAGGGGGTCTGGTGTGTG
GTTTCGTCTGGGGGCACTCCGGTCGCTTAAGTACCTCAAAGGGCAGGTTGCAGAAGGAGG
CCCAGGAGGTCTGTGCCTCAGAGGAAAGGCCCACGGCAGTTCGAGGTCCTGAGCCGGGAA
TGCAGGATGGCGGCGATGCAGAAGGGAAGCGGTGTTCCGAGTGAAGTCACATCCTTGGAG
GGAGATGAATGGGAGCTGAGTAAAGAAAATGTCCAACCTTTAAGGCAGGGGCGGATCATG
TCTACACTTCAGGGAGCACTGGCACAGCAAGAATCTACCTGTAACACCACTCTTCAGCAG
CAGAAACGGTGGGTGTGTAGAATGGTTGGTGCCCAACCTGCCATCATTTATCCTCAACTG
TGCTGGGTGATACCGGTGTGGATCCTTGCAGGGTAGAATAAGTAGTACTACTCTTCAAAA
GATGGTAGCATGAGAATCTGTTACCTTCCTGCTTTCCTACCACATAGCAGCTATCTAAAG
GTCTCAAGTGCAATTAAGAACAAGAGCTATAGGATTTCTTTATTTTTGGCTGCACCCACA
GCATATGTAAGTTTCTGGGCCAGGGATCAAATCTTCCACAGCTGCAGCAAGGCTGGATCC
TTCACCTACCGC

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

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               1-221, gnl|bosTau2|chr10 (23152998-23152777)
               

               
               1-221, gnl|canFam2|chr30 (10350941-10351428)
               

               
               1-221, gnl|dasNov1|scaffold_77662 (8209-7746)
               

               
               1-221, gnl|echTel1|scaffold_190200 (5765-6169)
               

               
               1-221, gnl|hg17|chr15 (38240392-38240838)
               

               
               1-221, gnl|Hg17|chr15 (38240544-38240748)
               

               
               1-221, gnl|loxAfr1|scaffold_24527 (13631-13200)
               

               
               1-221, gnl|mm7|chr2 (118338951-118339370)
               

               
               1-221, gnl|Mm7|chr2 (118339105-118339310)
               

               
               1-221, gnl|monDom2|scaffold_12 (2425457-2424946)
               

               
               1-221, gnl|panTro1|chr16 (38122146-38122592)
               

               
               1-221, gnl|rheMac2|chr7 (18491420-18491872)
               

               
               1-221, gnl|rn3|chr3 (104959106-104959519)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr10 (23152998-23152777)
               

               
               1-221, gnl|canFam2|chr30 (10350941-10351428)
               

               
               1-221, gnl|dasNov1|scaffold_77662 (8209-7746)
               

               
               1-221, gnl|echTel1|scaffold_190200 (5765-6169)
               

               
               1-221, gnl|hg17|chr15 (38240392-38240838)
               

               
               1-221, gnl|Hg17|chr15 (38240544-38240748)
               

               
               1-221, gnl|loxAfr1|scaffold_24527 (13631-13200)
               

               
               1-221, gnl|mm7|chr2 (118338951-118339370)
               

               
               1-221, gnl|Mm7|chr2 (118339105-118339310)
               

               
               1-221, gnl|monDom2|scaffold_12 (2425457-2424946)
               

               
               1-221, gnl|panTro1|chr16 (38122146-38122592)
               

               
               1-221, gnl|rheMac2|chr7 (18491420-18491872)
               

               
               1-221, gnl|rn3|chr3 (104959106-104959519)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               eep (0.122564)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               cty (0.10408)

	1-221, gnl\|bosTau2\|chr10 (23152998-23152777)
	1-221, gnl\|canFam2\|chr30 (10350941-10351428)
	1-221, gnl\|dasNov1\|scaffold_77662 (8209-7746)
	1-221, gnl\|echTel1\|scaffold_190200 (5765-6169)
	1-221, gnl\|hg17\|chr15 (38240392-38240838)
	1-221, gnl\|Hg17\|chr15 (38240544-38240748)
	1-221, gnl\|loxAfr1\|scaffold_24527 (13631-13200)
	1-221, gnl\|mm7\|chr2 (118338951-118339370)
	1-221, gnl\|Mm7\|chr2 (118339105-118339310)
	1-221, gnl\|monDom2\|scaffold_12 (2425457-2424946)
	1-221, gnl\|panTro1\|chr16 (38122146-38122592)
	1-221, gnl\|rheMac2\|chr7 (18491420-18491872)
	1-221, gnl\|rn3\|chr3 (104959106-104959519)