Non-Coding RNA Search

Ss1.1-rpigcb_9881.5

Sequence:


               
               TGGAGTCCAAGGAAGTTTTTATGAGTTTGTTTTGTTTTTAAGGTGGAAGATAATAGTGCA
ATTTGTGTGGATGATCAAGTAGAGAAGATCAAATAGTCAATGTCATTTTTTAATCGGTTA
TATGATGAAGATATTGTACGAGACAATGGCCATATTGTTAAATGTTTAGATTCTTTTTGT
GATCCCTTCCTTATTTCCGATGAGTTACGCAAAGTTTTGCTAGTGGAAGACTCAGAAAAA
TATGAAGTATTCAGCCAACCAGATAGAGAAGAGTTCCTGTTTTGTCTTTTCAAACACCTT
TGCCTTGGTGGAGCCCTTTGTCAATTTGAAGATGTGCTTAGTCCATATCTGGAAACAACA
AAGCTTATCTATAAGGATCTAGTGAGTGTTCGAAAGAATCCTCAAACCAAGAAAATACAA
ATTACCTCTTCTGTCTTTAAAGTTACAGCATATGATTCTGTTGGTATGTGCTACCCTTCA
ACAAAGAGCCATGAACAGACATTTTCTTACTTTATTGTGGACCCTATCATGCGTCATGTT
CATGTTTTATACCACTGTTACGGTGTCGGGGAAATGCCTTGATGATTTTTTTTTTTTCAG
ATTTTCTCTATTTACTATTTTTTATTCACCAATTTTACATTTTAATACTGATTTATGGAT
AAACATTTACTTTGAAAGTTAATTCAGGTAAAATTTAAGGAACTTGCTTAAAGCAAAAGA
AAACAAATACCAAGATGCCTTTCTTTAAATTTTTCTGGAATACACAGGAATCAAAAATCA
TCCCTAACATAATCTATACAATACAGGAATGGAATTTTTACAGAAAGTTACAAAGAACTA
AAAATCTACTAGTTCATGTTTGTTGCATTAAGATTTGAGTGAGTCTTCAAGTTTTCTATG
TATTTTATTTTAGAAGTGAATTAATTCTGGATTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAGTCCAAGGAAGTTTTTATGAGTTTGTTTTGTTTTTAAGGTGGAAGATAATAGTGCA
ATTTGTGTGGATGATCAAGTAGAGAAGATCAAATAGTCAATGTCATTTTTTAATCGGTTA
TATGATGAAGATATTGTACGAGACAATGGCCATATTGTTAAATGTTTAGATTCTTTTTGT
GATCCCTTCCTTATTTCCGATGAGTTACGCAAAGTTTTGCTAGTGGAAGACTCAGAAAAA
TATGAAGTATTCAGCCAACCAGATAGAGAAGAGTTCCTGTTTTGTCTTTTCAAACACCTT
TGCCTTGGTGGAGCCCTTTGTCAATTTGAAGATGTGCTTAGTCCATATCTGGAAACAACA
AAGCTTATCTATAAGGATCTAGTGAGTGTTCGAAAGAATCCTCAAACCAAGAAAATACAA
ATTACCTCTTCTGTCTTTAAAGTTACAGCATATGATTCTGTTGGTATGTGCTACCCTTCA
ACAAAGAGCCATGAACAGACATTTTCTTACTTTATTGTGGACCCTATCATGCGTCATGTT
CATGTTTTATACCACTGTTACGGTGTCGGGGAAATGCCTTGATGATTTTTTTTTTTTCAG
ATTTTCTCTATTTACTATTTTTTATTCACCAATTTTACATTTTAATACTGATTTATGGAT
AAACATTTACTTTGAAAGTTAATTCAGGTAAAATTTAAGGAACTTGCTTAAAGCAAAAGA
AAACAAATACCAAGATGCCTTTCTTTAAATTTTTCTGGAATACACAGGAATCAAAAATCA
TCCCTAACATAATCTATACAATACAGGAATGGAATTTTTACAGAAAGTTACAAAGAACTA
AAAATCTACTAGTTCATGTTTGTTGCATTAAGATTTGAGTGAGTCTTCAAGTTTTCTATG
TATTTTATTTTAGAAGTGAATTAATTCTGGATTGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14249726|ref|NP_116319.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14249726|ref|NP_116319.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               214-386, gnl|bosTau2|chr2 (84124095-84123923)
               

               
               214-386, gnl|Hg17|chr11 (101451814-101451986)
               

               
               214-386, gnl|Mm7|chr9 (8050026-8049854)
               


               
               454-936, gnl|bosTau2|chr2 (84115631-84115155)
               

               
               454-936, gnl|Hg17|chr11 (101459012-101459487)
               

               
               454-936, gnl|Mm7|chr9 (8046436-8046033)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               214-386, gnl|bosTau2|chr2 (84124095-84123923)
               

               
               214-386, gnl|Hg17|chr11 (101451814-101451986)
               

               
               214-386, gnl|Mm7|chr9 (8050026-8049854)
               


               
               454-936, gnl|bosTau2|chr2 (84115631-84115155)
               

               
               454-936, gnl|Hg17|chr11 (101459012-101459487)
               

               
               454-936, gnl|Mm7|chr9 (8046436-8046033)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               kid (1.42709)
               

               
               tra (0.369276)
               

               
               gul (0.177588)
               

               
               cty (0.10408)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (1.42709)
               

               
               tra (0.369276)
               

               
               gul (0.177588)
               

               
               cty (0.10408)

	214-386, gnl\|bosTau2\|chr2 (84124095-84123923)
	214-386, gnl\|Hg17\|chr11 (101451814-101451986)
	214-386, gnl\|Mm7\|chr9 (8050026-8049854)

	454-936, gnl\|bosTau2\|chr2 (84115631-84115155)
	454-936, gnl\|Hg17\|chr11 (101459012-101459487)
	454-936, gnl\|Mm7\|chr9 (8046436-8046033)