Non-Coding RNA Search

Ss1.1-rpigcb_9896.5

Sequence:


               
               AGCCATGGGCCGTCGGGAGCCGGTGGGTTGGGTGCTGCTCCTGGCACTGGGACTCTGCTG
TGCGCAAGGGGGGCGCCGCCGGAACGTGCTGCTGATCCTCGCGGACGATGGAGGCTTTGA
GAGTGGCGCCTACAACAACAGCGCCATCACCACCCCTCACCTGGACGCCTTGGCCCGCCG
CAGCATCGTCTTCCGCAATGCCTTCACCTCCGTCAGCAGCTGCTCGCCCAGCCGTGCCAG
CCTCCTCACTGGCCTGCCCCAGCATCAGAACGGAATGTATGGCCTGCACCAGGACGTCCA
CCACTTCAACTCCTTTGACCGGGTGCAGAGCCTGCCGCTGCTGCTGGGCCGAGCTGGTGT
TCGCACAGGCATCATTGGGAAGAAGCACGTGGGACCAGAGGCCGTGTACCCGTTTGACTT
CGCGCACACGGAGGAGAATGACTCCATCCTCCAGGTGGGGCGGAACATCACGCGGATGAA
ACTGCTGGTCCGGAAGTTCCTGCAGACTCAGGACGACAGGCCTTTCTTCCTCTATGTCGC
CTTCCACGACCCGCACCGCTGCGGGCACTCCCAGCCGCAGTACGGGGCCTTCTGTGAGAA
GTTTGGCAACGGGGAGAGTGGCATGGGGTGGATCCCAGACTGGACCCCCCAGACCTACAA
CCCGCAGGATGTGCAGGTGCCTTACTTCGTCCCTGACACCCCAGCAGCCCGAGCTGACCT
GGCCGCTCAGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCCATGGGCCGTCGGGAGCCGGTGGGTTGGGTGCTGCTCCTGGCACTGGGACTCTGCTG
TGCGCAAGGGGGGCGCCGCCGGAACGTGCTGCTGATCCTCGCGGACGATGGAGGCTTTGA
GAGTGGCGCCTACAACAACAGCGCCATCACCACCCCTCACCTGGACGCCTTGGCCCGCCG
CAGCATCGTCTTCCGCAATGCCTTCACCTCCGTCAGCAGCTGCTCGCCCAGCCGTGCCAG
CCTCCTCACTGGCCTGCCCCAGCATCAGAACGGAATGTATGGCCTGCACCAGGACGTCCA
CCACTTCAACTCCTTTGACCGGGTGCAGAGCCTGCCGCTGCTGCTGGGCCGAGCTGGTGT
TCGCACAGGCATCATTGGGAAGAAGCACGTGGGACCAGAGGCCGTGTACCCGTTTGACTT
CGCGCACACGGAGGAGAATGACTCCATCCTCCAGGTGGGGCGGAACATCACGCGGATGAA
ACTGCTGGTCCGGAAGTTCCTGCAGACTCAGGACGACAGGCCTTTCTTCCTCTATGTCGC
CTTCCACGACCCGCACCGCTGCGGGCACTCCCAGCCGCAGTACGGGGCCTTCTGTGAGAA
GTTTGGCAACGGGGAGAGTGGCATGGGGTGGATCCCAGACTGGACCCCCCAGACCTACAA
CCCGCAGGATGTGCAGGTGCCTTACTTCGTCCCTGACACCCCAGCAGCCCGAGCTGACCT
GGCCGCTCAGTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61833457|ref|XP_584109.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61833457|ref|XP_584109.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               145-262, - strand, RNAz p=0.755298

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               145-262, - strand, RNAz p=0.755298

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               96-262, gnl|bosTau2|chr19 (47280431-47280264)
               

               
               96-262, gnl|canFam2|chr9 (4530925-4530747)
               

               
               96-262, gnl|danRer3|chr22 (9952878-9952703)
               

               
               96-262, gnl|fr1|chrUn (148460053-148459887)
               

               
               96-262, gnl|galGal2|chr3_random (474373-474204)
               

               
               96-262, gnl|hg17|chr17 (75805405-75805591)
               

               
               96-262, gnl|Hg17|chr17 (75805593-75805426)
               

               
               96-262, gnl|mm7|chr11 (119461666-119461856)
               

               
               96-262, gnl|Mm7|chr11 (119461858-119461691)
               

               
               96-262, gnl|monDom2|scaffold_18 (11084664-11084849)
               

               
               96-262, gnl|panTro1|chr19 (79507531-79507717)
               

               
               96-262, gnl|rheMac2|chr16 (75679323-75679508)
               

               
               96-262, gnl|tetNig1|chr18 (2110721-2110553)
               

               
               96-262, gnl|xenTro1|scaffold_413 (767206-767011)
               


               
               517-678, gnl|bosTau2|chr19 (47277943-47277782)
               

               
               517-678, gnl|Hg17|chr17 (75802725-75802564)
               

               
               517-678, gnl|Mm7|chr11 (119459181-119459020)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               96-262, gnl|bosTau2|chr19 (47280431-47280264)
               

               
               96-262, gnl|canFam2|chr9 (4530925-4530747)
               

               
               96-262, gnl|danRer3|chr22 (9952878-9952703)
               

               
               96-262, gnl|fr1|chrUn (148460053-148459887)
               

               
               96-262, gnl|galGal2|chr3_random (474373-474204)
               

               
               96-262, gnl|hg17|chr17 (75805405-75805591)
               

               
               96-262, gnl|Hg17|chr17 (75805593-75805426)
               

               
               96-262, gnl|mm7|chr11 (119461666-119461856)
               

               
               96-262, gnl|Mm7|chr11 (119461858-119461691)
               

               
               96-262, gnl|monDom2|scaffold_18 (11084664-11084849)
               

               
               96-262, gnl|panTro1|chr19 (79507531-79507717)
               

               
               96-262, gnl|rheMac2|chr16 (75679323-75679508)
               

               
               96-262, gnl|tetNig1|chr18 (2110721-2110553)
               

               
               96-262, gnl|xenTro1|scaffold_413 (767206-767011)
               


               
               517-678, gnl|bosTau2|chr19 (47277943-47277782)
               

               
               517-678, gnl|Hg17|chr17 (75802725-75802564)
               

               
               517-678, gnl|Mm7|chr11 (119459181-119459020)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	96-262, gnl\|bosTau2\|chr19 (47280431-47280264)
	96-262, gnl\|canFam2\|chr9 (4530925-4530747)
	96-262, gnl\|danRer3\|chr22 (9952878-9952703)
	96-262, gnl\|fr1\|chrUn (148460053-148459887)
	96-262, gnl\|galGal2\|chr3_random (474373-474204)
	96-262, gnl\|hg17\|chr17 (75805405-75805591)
	96-262, gnl\|Hg17\|chr17 (75805593-75805426)
	96-262, gnl\|mm7\|chr11 (119461666-119461856)
	96-262, gnl\|Mm7\|chr11 (119461858-119461691)
	96-262, gnl\|monDom2\|scaffold_18 (11084664-11084849)
	96-262, gnl\|panTro1\|chr19 (79507531-79507717)
	96-262, gnl\|rheMac2\|chr16 (75679323-75679508)
	96-262, gnl\|tetNig1\|chr18 (2110721-2110553)
	96-262, gnl\|xenTro1\|scaffold_413 (767206-767011)

	517-678, gnl\|bosTau2\|chr19 (47277943-47277782)
	517-678, gnl\|Hg17\|chr17 (75802725-75802564)
	517-678, gnl\|Mm7\|chr11 (119459181-119459020)