Ss1.1-rpigcb_9979.5
|
GGATGCTCTTCTGGAGGAACTGAACCGCCGGCAGCAGCGTCCCCGCCCTGGCCTTGAGCT
TCTGCCCGTGCGCCATGAGCAGCTTCTGCGCCCACACGAGGTAGAACTCCAGATGGTGCG
ACACCTCCAGGGACGAAGCCAGAAACTCCAGCACCTTCTCCACGTACAGGTCCGGCAGGG
AGGAGGTGACGACCTCGACCTCGTCCCAGGGCACCGACTCCAGGGCCTCCTGCAGCAGCT
TCCTCTCGTTGAGCCGGAAGGCCATCAGAATCGCCCGGGTGAAGTCCCGCTGGCGCAGCG
CCGCCCGGACGCGTGCGGGGGTGACACTGGTGTCCAGCTCAAACGGGTCAAAGAGCATCC
GGGCGTCGAGGGAGTAGATGAGGAGCCCCTCGGTGGTGGTGGCCGCCCAGCAGCGCCCGG
TGGGAGAGAAGC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GGATGCTCTTCTGGAGGAACTGAACCGCCGGCAGCAGCGTCCCCGCCCTGGCCTTGAGCT
TCTGCCCGTGCGCCATGAGCAGCTTCTGCGCCCACACGAGGTAGAACTCCAGATGGTGCG
ACACCTCCAGGGACGAAGCCAGAAACTCCAGCACCTTCTCCACGTACAGGTCCGGCAGGG
AGGAGGTGACGACCTCGACCTCGTCCCAGGGCACCGACTCCAGGGCCTCCTGCAGCAGCT
TCCTCTCGTTGAGCCGGAAGGCCATCAGAATCGCCCGGGTGAAGTCCCGCTGGCGCAGCG
CCGCCCGGACGCGTGCGGGGGTGACACTGGTGTCCAGCTCAAACGGGTCAAAGAGCATCC
GGGCGTCGAGGGAGTAGATGAGGAGCCCCTCGGTGGTGGTGGCCGCCCAGCAGCGCCCGG
TGGGAGAGAAGC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
47-199, gnl|bosTau2|chr1 (91475620-91475468) |
|
47-199, gnl|Hg17|chr21 (44372707-44372555) |
|
47-199, gnl|Mm7|chr10 (77828176-77828328) |
| |
|
200-418, gnl|bosTau2|chr1 (91475321-91475103) |
|
200-418, gnl|canFam2|chr31 (40346343-40346581) |
|
200-418, gnl|danRer3|chr1 (32836446-32836208) |
|
200-418, gnl|dasNov1|scaffold_104335 (5652-5415) |
|
200-418, gnl|echTel1|scaffold_311417 (231095-231331) |
|
200-418, gnl|fr1|chrUn (128211243-128211473) |
|
200-418, gnl|galGal2|chr1 (103994483-103994721) |
|
200-418, gnl|hg17|chr21 (44372227-44372465) |
|
200-418, gnl|Hg17|chr21 (44372458-44372240) |
|
200-418, gnl|mm7|chr10 (77828670-77828433) |
|
200-418, gnl|Mm7|chr10 (77828438-77828656) |
|
200-418, gnl|monDom2|scaffold_29 (16411690-16411928) |
|
200-418, gnl|oryCun1|scaffold_200542 (12328-12141) |
|
200-418, gnl|panTro1|chr22 (44536273-44536511) |
|
200-418, gnl|rheMac2|chr3 (2587872-2587634) |
|
200-418, gnl|rn3|chr20 (10847535-10847772) |
|
200-418, gnl|tetNig1|chr3 (104331-104557) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
47-199, gnl|bosTau2|chr1 (91475620-91475468) |
|
47-199, gnl|Hg17|chr21 (44372707-44372555) |
|
47-199, gnl|Mm7|chr10 (77828176-77828328) |
| |
|
200-418, gnl|bosTau2|chr1 (91475321-91475103) |
|
200-418, gnl|canFam2|chr31 (40346343-40346581) |
|
200-418, gnl|danRer3|chr1 (32836446-32836208) |
|
200-418, gnl|dasNov1|scaffold_104335 (5652-5415) |
|
200-418, gnl|echTel1|scaffold_311417 (231095-231331) |
|
200-418, gnl|fr1|chrUn (128211243-128211473) |
|
200-418, gnl|galGal2|chr1 (103994483-103994721) |
|
200-418, gnl|hg17|chr21 (44372227-44372465) |
|
200-418, gnl|Hg17|chr21 (44372458-44372240) |
|
200-418, gnl|mm7|chr10 (77828670-77828433) |
|
200-418, gnl|Mm7|chr10 (77828438-77828656) |
|
200-418, gnl|monDom2|scaffold_29 (16411690-16411928) |
|
200-418, gnl|oryCun1|scaffold_200542 (12328-12141) |
|
200-418, gnl|panTro1|chr22 (44536273-44536511) |
|
200-418, gnl|rheMac2|chr3 (2587872-2587634) |
|
200-418, gnl|rn3|chr20 (10847535-10847772) |
|
200-418, gnl|tetNig1|chr3 (104331-104557) |
