Non-Coding RNA Search

Ss1.1-rpigcf0_001626.5

Sequence:


               
               AATTCTTAAGTGAGGCAAAAGCTTTATACATTTGCAGATTTTTTTTTCCTTCCACTGAAT
TTTGATAGGAAAAAAAAAAATCATTCTCCTCCCTGACCTGAGGGGTCACAAAAATACCAC
TATTTCATTTCTAGGCTCAGCTCGCAGGAAAAATACAGAATCAATTGCAGCTTCAAACAT
CTTCCTAGATGTTGCCTACGTTAGAAAAGAATAGCCAACACAAATAAAACTAGTAGGGTG
GGGTGGCATGGGAATATAATCATTTATTTGGAGTTGTAACCTGGTACTCCAAACAAAGGC
CTTATTATCCTCTATTGAAAGCTTTTAGGGCACAAGGAGGAAGTGAATGGGATGACCCAC
TTGAGACAGCACCAAAAGAACAGAGGTGATGTCACACCCCTGGAGGATGGCAACAGGCAG
AGGGAGAAGACGGAACAATTAAAAGTGAATTGGGACAGGAGATCCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTCTTAAGTGAGGCAAAAGCTTTATACATTTGCAGATTTTTTTTTCCTTCCACTGAAT
TTTGATAGGAAAAAAAAAAATCATTCTCCTCCCTGACCTGAGGGGTCACAAAAATACCAC
TATTTCATTTCTAGGCTCAGCTCGCAGGAAAAATACAGAATCAATTGCAGCTTCAAACAT
CTTCCTAGATGTTGCCTACGTTAGAAAAGAATAGCCAACACAAATAAAACTAGTAGGGTG
GGGTGGCATGGGAATATAATCATTTATTTGGAGTTGTAACCTGGTACTCCAAACAAAGGC
CTTATTATCCTCTATTGAAAGCTTTTAGGGCACAAGGAGGAAGTGAATGGGATGACCCAC
TTGAGACAGCACCAAAAGAACAGAGGTGATGTCACACCCCTGGAGGATGGCAACAGGCAG
AGGGAGAAGACGGAACAATTAAAAGTGAATTGGGACAGGAGATCCCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               213-332, + strand, RNAz p=0.792704

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-332, + strand, RNAz p=0.792704

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               134-457, gnl|bosTau2|chr11 (9436025-9436344)
               

               
               134-457, gnl|canFam2|chr17 (52266217-52265822)
               

               
               134-457, gnl|dasNov1|scaffold_28375 (11660-11257)
               

               
               134-457, gnl|echTel1|scaffold_323101 (5160-4740)
               

               
               134-457, gnl|hg17|chr2 (74001624-74002041)
               

               
               134-457, gnl|Hg17|chr2 (74002111-74001790)
               

               
               134-457, gnl|loxAfr1|scaffold_18695 (4728-5146)
               

               
               134-457, gnl|mm7|chr6 (83568649-83568273)
               

               
               134-457, gnl|oryCun1|scaffold_199376 (56595-56999)
               

               
               134-457, gnl|panTro1|chr12 (76406473-76406889)
               

               
               134-457, gnl|rheMac2|chr13 (74080071-74080482)
               

               
               134-457, gnl|rn3|chr4 (118010936-118010611)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-457, gnl|bosTau2|chr11 (9436025-9436344)
               

               
               134-457, gnl|canFam2|chr17 (52266217-52265822)
               

               
               134-457, gnl|dasNov1|scaffold_28375 (11660-11257)
               

               
               134-457, gnl|echTel1|scaffold_323101 (5160-4740)
               

               
               134-457, gnl|hg17|chr2 (74001624-74002041)
               

               
               134-457, gnl|Hg17|chr2 (74002111-74001790)
               

               
               134-457, gnl|loxAfr1|scaffold_18695 (4728-5146)
               

               
               134-457, gnl|mm7|chr6 (83568649-83568273)
               

               
               134-457, gnl|oryCun1|scaffold_199376 (56595-56999)
               

               
               134-457, gnl|panTro1|chr12 (76406473-76406889)
               

               
               134-457, gnl|rheMac2|chr13 (74080071-74080482)
               

               
               134-457, gnl|rn3|chr4 (118010936-118010611)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ctl (0.153069)
               

               
               lun (0.150489)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.153069)
               

               
               lun (0.150489)

	134-457, gnl\|bosTau2\|chr11 (9436025-9436344)
	134-457, gnl\|canFam2\|chr17 (52266217-52265822)
	134-457, gnl\|dasNov1\|scaffold_28375 (11660-11257)
	134-457, gnl\|echTel1\|scaffold_323101 (5160-4740)
	134-457, gnl\|hg17\|chr2 (74001624-74002041)
	134-457, gnl\|Hg17\|chr2 (74002111-74001790)
	134-457, gnl\|loxAfr1\|scaffold_18695 (4728-5146)
	134-457, gnl\|mm7\|chr6 (83568649-83568273)
	134-457, gnl\|oryCun1\|scaffold_199376 (56595-56999)
	134-457, gnl\|panTro1\|chr12 (76406473-76406889)
	134-457, gnl\|rheMac2\|chr13 (74080071-74080482)
	134-457, gnl\|rn3\|chr4 (118010936-118010611)