Non-Coding RNA Search

Ss1.1-rpigcf0_006377.5

Sequence:


               
               CGTCTCACAGCTTCTTTGAGCCAGTGAAATGACGGGGCTGAACGGGTTGGAAACTAGGTT
CCCGTCTCCTCTAATTATCTTCAGTGAGTGATGGTGGAAGGAAGGAATGGCTGCCAGATG
ATGCTACCTAATGCCAAGAGACATGGCAATCAACATCCCTCAACTTAATGAGAGCAGCCT
CTCTCAGTTGTTTACTCAAAGTCTCCCTACGCAGATTCTAAATTATTTGAGTAGGAAAGA
TTGTGCCCTATACCTGCAAAATATCCGGCCACAAGCATAGAATCTGGAATATGGGGATGT
TTAGTAAATACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCTCACAGCTTCTTTGAGCCAGTGAAATGACGGGGCTGAACGGGTTGGAAACTAGGTT
CCCGTCTCCTCTAATTATCTTCAGTGAGTGATGGTGGAAGGAAGGAATGGCTGCCAGATG
ATGCTACCTAATGCCAAGAGACATGGCAATCAACATCCCTCAACTTAATGAGAGCAGCCT
CTCTCAGTTGTTTACTCAAAGTCTCCCTACGCAGATTCTAAATTATTTGAGTAGGAAAGA
TTGTGCCCTATACCTGCAAAATATCCGGCCACAAGCATAGAATCTGGAATATGGGGATGT
TTAGTAAATACT

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               13-312, gnl|bosTau2|chr1 (8209633-8209935)
               

               
               13-312, gnl|canFam2|chr31 (24422730-24422982)
               

               
               13-312, gnl|hg17|chr21 (26236529-26236794)
               

               
               13-312, gnl|Hg17|chr21 (26236563-26236868)
               

               
               13-312, gnl|loxAfr1|scaffold_1095 (121798-121529)
               

               
               13-312, gnl|mm7|chr16 (84998161-84998445)
               

               
               13-312, gnl|Mm7|chr16 (84998215-84998500)
               

               
               13-312, gnl|oryCun1|scaffold_202416 (84129-84400)
               

               
               13-312, gnl|panTro1|chr22 (26231613-26231878)
               

               
               13-312, gnl|rheMac2|chr3 (20721992-20721727)
               

               
               13-312, gnl|rn3|chr11 (24500697-24500947)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-312, gnl|bosTau2|chr1 (8209633-8209935)
               

               
               13-312, gnl|canFam2|chr31 (24422730-24422982)
               

               
               13-312, gnl|hg17|chr21 (26236529-26236794)
               

               
               13-312, gnl|Hg17|chr21 (26236563-26236868)
               

               
               13-312, gnl|loxAfr1|scaffold_1095 (121798-121529)
               

               
               13-312, gnl|mm7|chr16 (84998161-84998445)
               

               
               13-312, gnl|Mm7|chr16 (84998215-84998500)
               

               
               13-312, gnl|oryCun1|scaffold_202416 (84129-84400)
               

               
               13-312, gnl|panTro1|chr22 (26231613-26231878)
               

               
               13-312, gnl|rheMac2|chr3 (20721992-20721727)
               

               
               13-312, gnl|rn3|chr11 (24500697-24500947)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ctl (0.459207)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.459207)

	13-312, gnl\|bosTau2\|chr1 (8209633-8209935)
	13-312, gnl\|canFam2\|chr31 (24422730-24422982)
	13-312, gnl\|hg17\|chr21 (26236529-26236794)
	13-312, gnl\|Hg17\|chr21 (26236563-26236868)
	13-312, gnl\|loxAfr1\|scaffold_1095 (121798-121529)
	13-312, gnl\|mm7\|chr16 (84998161-84998445)
	13-312, gnl\|Mm7\|chr16 (84998215-84998500)
	13-312, gnl\|oryCun1\|scaffold_202416 (84129-84400)
	13-312, gnl\|panTro1\|chr22 (26231613-26231878)
	13-312, gnl\|rheMac2\|chr3 (20721992-20721727)
	13-312, gnl\|rn3\|chr11 (24500697-24500947)