Non-Coding RNA Search

Ss1.1-rpigcf0_006532.5

Sequence:


               
               TTCCACCCCCCCATGGTCATGGGAGGGGAGGAGTGACCCTGGGCACTGGTGAAGCTGAGT
TATGGTTAGGGAGGGGCCAGCTGCCTTGGATGGCTTTGGCTTCGACCTCTTCCAGAATTC
TGATCCCCAGATATCCCTCATTCTCTCAGGACAGAGACTCAGCAGCTTGTTTCCTTGGCC
TGACTGTATTTGTTTGCCATCCTGTCTGGTGTCACAGCCTCACAATGACTCCTCTACCTA
CTCATTTGAGCCCTGAGGAAAACCTATTCGATATGAATTCTTTGTTGCTTTTGTGACAGT
GGCCTCTGACCAGACAGGTTAAGCTCCCTGGACCCCAAGGGCTTTGTTGTCTCTGCTCCC
TATCTTTTAGGGTGATGATCTCACTCTTGCCCTCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCCACCCCCCCATGGTCATGGGAGGGGAGGAGTGACCCTGGGCACTGGTGAAGCTGAGT
TATGGTTAGGGAGGGGCCAGCTGCCTTGGATGGCTTTGGCTTCGACCTCTTCCAGAATTC
TGATCCCCAGATATCCCTCATTCTCTCAGGACAGAGACTCAGCAGCTTGTTTCCTTGGCC
TGACTGTATTTGTTTGCCATCCTGTCTGGTGTCACAGCCTCACAATGACTCCTCTACCTA
CTCATTTGAGCCCTGAGGAAAACCTATTCGATATGAATTCTTTGTTGCTTTTGTGACAGT
GGCCTCTGACCAGACAGGTTAAGCTCCCTGGACCCCAAGGGCTTTGTTGTCTCTGCTCCC
TATCTTTTAGGGTGATGATCTCACTCTTGCCCTCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               47-165, - strand, RNAz p=0.782332

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               47-165, - strand, RNAz p=0.782332

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               8-396, gnl|bosTau2|chr23 (23972571-23972944)
               

               
               8-396, gnl|canFam2|chr35 (29326760-29327028)
               

               
               8-396, gnl|echTel1|scaffold_119690 (869-591)
               

               
               8-396, gnl|hg17|chr6 (30171333-30171634)
               

               
               8-396, gnl|Hg17|chr6 (30171737-30171381)
               

               
               8-396, gnl|mm7|chr17 (35079504-35079225)
               

               
               8-396, gnl|Mm7|chr17 (35079106-35079455)
               

               
               8-396, gnl|monDom2|scaffold_42 (19138862-19138536)
               

               
               8-396, gnl|oryCun1|scaffold_173299 (62407-62709)
               

               
               8-396, gnl|panTro1|chr5 (30658733-30659034)
               

               
               8-396, gnl|rheMac2|chr4 (29678384-29678685)
               

               
               8-396, gnl|rn3|chr20 (1719087-1719365)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-396, gnl|bosTau2|chr23 (23972571-23972944)
               

               
               8-396, gnl|canFam2|chr35 (29326760-29327028)
               

               
               8-396, gnl|echTel1|scaffold_119690 (869-591)
               

               
               8-396, gnl|hg17|chr6 (30171333-30171634)
               

               
               8-396, gnl|Hg17|chr6 (30171737-30171381)
               

               
               8-396, gnl|mm7|chr17 (35079504-35079225)
               

               
               8-396, gnl|Mm7|chr17 (35079106-35079455)
               

               
               8-396, gnl|monDom2|scaffold_42 (19138862-19138536)
               

               
               8-396, gnl|oryCun1|scaffold_173299 (62407-62709)
               

               
               8-396, gnl|panTro1|chr5 (30658733-30659034)
               

               
               8-396, gnl|rheMac2|chr4 (29678384-29678685)
               

               
               8-396, gnl|rn3|chr20 (1719087-1719365)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ctl (0.918414)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ctl (0.918414)

	8-396, gnl\|bosTau2\|chr23 (23972571-23972944)
	8-396, gnl\|canFam2\|chr35 (29326760-29327028)
	8-396, gnl\|echTel1\|scaffold_119690 (869-591)
	8-396, gnl\|hg17\|chr6 (30171333-30171634)
	8-396, gnl\|Hg17\|chr6 (30171737-30171381)
	8-396, gnl\|mm7\|chr17 (35079504-35079225)
	8-396, gnl\|Mm7\|chr17 (35079106-35079455)
	8-396, gnl\|monDom2\|scaffold_42 (19138862-19138536)
	8-396, gnl\|oryCun1\|scaffold_173299 (62407-62709)
	8-396, gnl\|panTro1\|chr5 (30658733-30659034)
	8-396, gnl\|rheMac2\|chr4 (29678384-29678685)
	8-396, gnl\|rn3\|chr20 (1719087-1719365)